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Microarray databases





Encyclopedia results for Microarray databases

  1. List of biodiversity databases

    This is a list of biodiversity databases . Biodiversity databases store taxonomy taxonomic information which provide information on the biodiversity of a particular area or group of living organisms. They may store specimen level information, species level information, information on nomenclature, or any combination of the above. Most are available online. Specimen focused databases contain data about individual specimens, as represented by vouchered museum specimens, collections of specimen photographs, data on field based specimen observations and morphological or genetic data. Species focused databases contain information summarised at the species level. Some species focused databases attempt to compile comprehensive data about particular species FishBase , while others focus on particular species attributes, such as checklists of species in a given area FEOW or the conservation status of species CITES or IUCN Red List . Nomenclators act as summaries of taxonomic revisions and set a key between specimen focused and species focused databases. They do this because taxonomic revisions use specimen data to determine species limits. class wikitable sortable Name Focus Collection All Catfish Species Inventory  ref cite web url http silurus.acnatsci.org title All Catfish Species Inventory accessdate 2010 06 04 ref Catfish information collated by genera, including estimated numbers of species, taxonomic experts Arctos  ref cite web url http arctos.database.museum title Arctos accessdate 2011 06 09 ref Specimen holdings of several natural history museums, agencies, and accessible private collections Vertebrates, invertebrates, parasites, vascular and non vascular plants, many with images and extensive usage data. AntWeb  ref cite web url http www.antweb.org title AntWeb author date work publisher accessdate 2010 06 04 ref Ant s Specimen information, collection details ... Category Biological databases ...   more details



  1. List of genealogy databases

    Merge List of genealogy portals date March 2010 This is a list of genealogy databases and online resources that are not specifically restricted to a particular place, family set, or time period in their content. Dynamic list FamilySearch a database developed by The Church of Jesus Christ of Latter day Saints . GEDCOMP automated, free GEDCOM COMParison mostly related to Denmark . ref cite news date 2004 04 22 accessdate 2009 01 14 url http query.nytimes.com gst fullpage.html?res 9807E3D8163AF931A15757C0A9629C8B63&sec &spon &pagewanted print title From Shared Resources, Your Personal History author Peter Wayner work The New York Times ref GeneaNet an international genealogy database. Hindu genealogy registers at Haridwar , India , microfilmed at the Genealogical Society of Utah GSU , USA. MyHeritage research, an aggregated search system covering a large number of genealogy databases. Rodovid global genealogy, over 19 languages. Serbian Genealogical Society Contains a online database with surnames, locations and background information. Limited access for unregistered users. SortedByName millions of entries from transcription projects, sorted alphabetically and by Soundex, with links to their respective transcription project sites. Werelate.org large genealogy wiki, supporting sourced collaborative. With wiki pages for over 2 million persons, 700,000 families. Sponsored by the Allen County Public Library and the Foundation for On Line Genealogy. Also hosts the largest genealogical referenced place index with over 400,000 wiki pages and a genealogical source index with almost one million wiki pages. Comparison of notable databases for uploading family trees Some of these also have social network ing features. class sortable wikitable Web site Alexa Internet Alexa traffic rank ref name Alexa Traffic rank according to http www.alexa.com siteinfo ancestry.com rodovid.org familysearch.org ... databases de Genealogie Datenbank ...   more details



  1. Restricting Access to Databases

    Orphan date February 2009 Restricting access to production databases is a requirement of Sarbanes Oxley Act sections 302, 404, and is included in the COBIT framework. Restricting access Steps to restrict database access within an organization Implement Separation of duties SOD a preventive control. Establish test and production environments which is preventive control. Restrict user account and Database administrator access which is a preventive control. Turn on audit trails, monitoring software, or exception reports which are detective controls. Elements to restrict include br Data access Successful Failed Selects Data Changes Insert, Update, Delete System Access Successful Failed Logins User Role Permissions Password changes Privileged User Activity All Schema Changes Create Drop Alter Tables, Columns, Fields Controls Compensating Controls Exploiting technology known as triggers. Triggers are user written code, or DBA written code, that gets inserted into the database and gets executed whenever an insert or an update or a delete occurs. br Cons br a. Transaction performance could suffer. br b. This solution does not provide 100 assurances of an incorruptible audit trail. br c. Triggers can be modified by anyone who has the appropriate privileges. Implement application based auditing. br Con br Effective only if no other application or utility can access the database s . Perform auditing on a per database, per table, per column, or per user basis. br Con br Labor intensive for IT. Would require a manual review the audit report and verify before after what was changed and sign off that the change was authorized and acceptable. Control evaluation considerations by Internal Audit The overall control evaluation cannot be determined until after the compensating controls have .... The best control environment surrounding databases is to have the ability to track and review, any and all adds, deletes and modifications to the databases. Deficiency Deficiency and Material Weakness ...   more details



  1. List of online databases

    Matrix Y Yahoo Z Zabasearch.com Zillow.com ZINC database Zoho Creator See also List of academic databases and search engines List of biodiversity databases List of neuroscience databases References Reflist Category Online databases Category Internet related lists Databases ...   more details



  1. List of funding opportunity databases

    This is a list of online database s that publish funding opportunity funding opportunities . http australiangovernmentgrants.org wizard.php Australian Government Grants Australian Directory of Philanthropy , Philanthropy Australia Community of Science Funding Opportunities Dialog OnDisc Grants Database , Dialog OnDisc FC Search , Foundation Center , replaced by Foundation Directory Online Federal Assistance Program Retrieval System FAPRS Federal Information Exchange FEDIX , merged with RAMS Federal Research in Progress FEDRIP , National Technical Information Service grants.gov , US Federal Government Funding Opportunities GrantSelect GrantScape , Catalog of Federal Domestic Assistance GrantSelect , American Association of State Colleges and Universities Illinois Researcher Information Service IRIS Research Professional , Research Limited http www.researchresearch.com professional http www.researchresearch.com professional SciVal Funding , Elsevier Sponsored Programs Information Network SPIN , InfoEd The Funding Portal, Search Engine for Canadian Public Funding Opportunities http www.thefundingportal.com www.thefundingportal.com World Academy of Young Scientists http www.waysnet.org wiki index.php?title Searching for Funds Searching for Funds http www.waysnet.org wiki index.php?title List of funding bodies List of funding bodies http www.ors.duke.edu find tools index.html Funding Search Tools at Duke University http foundationcenter.org findfunders Resources at http foundationcenter.org Category Research Category Online databases zh ...   more details



  1. List of neuroscience databases

    A number of online neuroscience databases are available which provide information regarding gene expression , neurons , macroscopic brain structure, and neurological or psychiatric disorders. While some databases contain descriptive and numerical data, others include postmortem brain sections or 3D MRI and fMRI images. A list that is regularly updated can be found at the http neuinfo.org nif nifgwt.html?query database&tab registry Neuroscience Information Framework database list , which contains over 2200 databases relevant to neuroscience. Try to add alphabetically to the table, or add to the other databases section and someone else will hopefully integrate it into the table. It is best if we have a small number of categories to the Data and Level section so ordering the table by this parameter is meaningful. Keep descriptions quite short Thanks class wikitable sortable style font size 85 text align center width auto style width 12em Name and External Link Description Organism Level gene, neuron, macroscopic Data MRI, fMRI, images, descriptive, numerical Disorder Register to view data? Ref Allen Brain Atlas http www.brain map.org Atlas, stained sections from brains showing development and gene expression Mouse, Human Macroscopic, Gene Images Healthy No ref Cite journal last Lein first Ed S. authorlink coauthors et al. year 2007 month title Genome wide atlas of gene expression in the adult mouse brain journal Nature journal Nature volume 445 issue 7124 pages 168 176 doi 10.1038 nature05453 url pmid 17151600 ref Alzheimer s Disease Neuroimaging Initiative ADNI http adni.loni.ucla.edu Structural MRI images Human Macroscopic MRI datasets Healthy and Alzheimer s Disease Yes ref cite journal doi 10.1002 jmri.21049 full last1 Jack first1 CR last2 Bernstein first2 MA last3 Fox ... No Other databases http www.birncommunity.org resources data BIRN fMRI and MRI data http fcon 1000.projects.nitrc.org ... Gateway References Reflist 2 DEFAULTSORT List Of Neuroscience Databases Category Biological databases ...   more details



  1. Oklahoma State Agency Databases

    , food, and forestry around Oklahoma. Below are a number of databases to search for vital statistics ... connections to the Department home page and various online databases. http odol agent.auto ... ada OESC Job Search Category Online databases Category Government databases ...   more details



  1. Thermodynamic databases for pure substances

    the heat content . Different databases designate this term in different ways for example H sub T sub ... thermodynamic databases such as for steam, the reference temperature is 273.15 K 0 C . The Heat capacity ... of thermochemical databases may contain some additional thermodynamic functions. For example ... databases A thermodynamic database consists of sets of critically evaluated values for the major thermodynamic ... equations that could be used to reproduce the tabular values. More recently, computerized databases ... at any temperature and prepare tables for printing. Computerized databases often include subroutines ... for the equation. Most computerized databases will create a table of thermodynamic values using the values ... data. http www.thermodata.org THERMODATA Thermochemical Databases and Software. http www.aiche.org ... design and equilibrium calculations. http www.mtdata software.com MTDATA software and databases for calculation ... Steam Tables Online calculator based on IAPWS IF97 Category Thermodynamics Category Scientific databases ...   more details



  1. List of online music databases

    This is a list of online music databases , as well as including a list of sites that currently provide free and paid for on demand music as a streaming media . A primary unit of many of these two types of sites is the Song track s which is often referred to in the marketplace simply as a song. DO NOT ADD NEW ENTRIES THAT DON T ALREADY HAVE ASSOCIATED ARTICLES. Alternatively, you should provide evidence of notability on the talk page, or in your edit summary see http en.wikipedia.org wiki Wikipedia Notability Online music databases Below is a table of online music databases that are largely free of charge. Note that many of the sites provide a specialized service or focus on a particular music genre. Some of these operate as an online music store or purchase referral service in some capacity. Among the sites that have information on the largest number of entities are those sites that focus on discographies of composing and performing artists. class wikitable sortable Database Services No. of tracks No. of releases No. of artists Notes License Full free access Albumography Database of information, ratings, and reviews for artists, albums, and songs Yes Allmusic Music information and reviews 20,000,000 ref name allmusic cite web title Coverage Statistics publisher allmusic url Allmusic class about id pure url yes accessdate 2011 06 12 ref 2,200,000 ref name allmusic Song samples only BestEverAlbums.com Database and community 180,000 ref name BEA cite web title BestEverAlbums.com Statistics publisher BestEverAlbums.com url http www.besteveralbums.com howitworks.php accessdate 2010 07 28 ref 15,000 ref name BEA 7,000 ref name BEA Song samples only Choral Public Domain Library TimeTrippinRadio.com Online Radio Station, Music Database and Community, featuring information, ratings, and reviews for artists, albums, and songs in Blues, Jazz, Gospel, R&B Soul, and Southern Soul genres ... databases Category Online content distribution Music es Anexo Bases de datos en l nea de m sica ...   more details



  1. Atmospheric Chemistry Observational Databases

    science databases ...   more details



  1. Minimum Information About a Microarray Experiment

    for more gene expression terminology Glossary of gene expression terms MIAME Minimum Information About a Microarray Experiment is a standard created by the FGED Society for reporting microarray experiments ref cite web url http www.mged.org miame title MIAME home page work FGED Society website accessdate 2008 11 23 ref . It is intended to specify all the information necessary to interpret the results of the experiment unambiguously and to potentially reproduce the experiment. While the standard defines the content required for compliant reports, it does not specify the format in which this data should be presented. There are a number of file formats for representing this data, and both public and subscription based repositories for such experiments. References references See also MIAPE Category Minimum Information Standards Category Microarrays bioinformatics stub pl MIAME ...   more details



  1. Reverse phase protein lysate microarray

    Reverse phase protein microarray RPMA is a protein array designed as a micro or nano scaled dot blot platform Dot blot dot blot that allows measurement of protein expression levels in a large number of biological samples simultaneously in a quantitative manner when high quality antibodies are available. ref name A cite journal coauthors B. Spurrier, S. Ramalingam, S. Nishizuka year 2008 title Reverse phase protein microarrays for cell signaling analysis journal Nature Protocols publisher Nature publishing Group volume 3 issue 11 pages 1796 1808 url http www.nature.com nprot journal v3 n11 pdf nprot.2008.179.pdf doi 10.1038 nprot.2008.179 pmid 18974738 last1 Spurrier first1 B ref Technically, minuscule amounts of a cellular lysates, from intact cells or laser capture microdissected cells, b body fluids such as serum, CSF, urine, vitreous, saliva, etc., are immobilized on individual spots on a microarray that is then incubated with a single specific antibody to detect expression of the target protein across many samples. One microarray, depending on the design, can accommodate hundreds to thousands of samples that are printed in a series of replicates. Detection is performed using either a primary or a secondary labeled antibody by chemiluminescent , fluorescent or colorimetric assays .... Other protein microarray s include forward protein microarrays PMAs and antibody microarray s AMAs . PMAs immobilize individual purified and sometimes denatured recombinant proteins on the microarray ... analytes from the sample applied on the microarray ref name B ref name C . The target protein ... as a bait in here and reverse phase protein microarray at the molecular level. Experimental design ... papers showing that Arrayit Microarray Printing Pins can also be used and produce microarrays ... size on the microarray, ranging in diameter from 85 to 200 micrometres, enables the analysis of thousands ... blotting prior to beginning RPMA analysis. ref name A To overcome this issue, two open resource databases ...   more details



  1. List of academic databases and search engines

    This page contains a representative list of major databases and search engines useful in an academic setting for finding and accessing articles in academic journal s, or in repository publishing repositories , archives, or other collections of scientific journal scientific and academic journal other ... be used for academic purposes bibliographic database s for information about databases giving bibliographic ...?marketID 1 List of EBSCO databases ref no Subscription EBSCO Publishing ref http www.ebscohost.com ... US catalogs databases detail agricola set c.shtml AGRICOLA Proquest ref Ovid Technologies OVID . ref ... A meta search engine for 50 major bioinformatic databases and projects. yes Free Available ..., Japan, and Korea, including online databases, digital collections, and open access journals. yes ... Multidisciplinary Australasian aggregator of bibliographic databases and journals n a RMIT Publishing ... several database vendors. ref http www.apa.org databases vendors homepage.html PsycINFO vendors list ... databases Readersg.htm Reader s Guide to Periodical Literature ref Readers Guide to Periodical ... H. W. Wilson Company ref http www.hwwilson.com Databases rdgretro.htm Reader s Guide ... databases and 200 million pages of science information with just one query, and is a gateway to over ... science Categories indexed Protocols, Online tools, Powerpoints, Databases, Software yes Free ... of national and international scientific databases and portals. WorldWideScience accelerates scientific discovery and progress by providing one stop searching of databases from around the world ... projects List of online databases List of online encyclopedias List of educational video websites List of neuroscience databases References Reflist 3 DEFAULTSORT List Of Academic Databases And Search Engines Category Academic publishing Category Scientific databases Category Library science Category Internet related lists Category Internet search engines Category Bibliographic databases es Anexo ...   more details



  1. Unisys OS 2200 databases

    The Unisys OS 2200 operating system OS 2200 database managers are all part of the Universal Data System UDS . UDS provides a common control structure for multiple different data models. Flat files sequential, multi keyed indexed sequential MSAM, and fixed block ref Unisys Corporation 1997 . u Shared File System SFS 2200 Administration and Support Reference Manual u . Unisys publication 7831 0786 . Roseville, MN. http public.support.unisys.com 2200 docs cp12.0 pdf 78310786 002.pdf ref , Network model network DMS ref Unisys Corporation 1999 . u Data Management System DMS 2200 Schema Data Definition Language DDL Administration, Operations, and Programming Guide u . Unisys publication 7831 0745 . Roseville, MN. http public.support.unisys.com 2200 docs cp12.0 pdf 78310745 004.pdf ref , and Relational database relational RDMS ref Unisys Corporation 1998 . u Relational Data Management System RDMS 2200 and IPF SQL Interface End Use Guide u . Unisys publication 7831 0778 . Roseville, MN. http public.support.unisys.com 2200 docs cp12.0 pdf 78310778 002.pdf ref data models all share a common locking, recovery, and clustering mechanism. OS 2200 applications can use any mixtures of these data models along with the high volume transaction file system ref Unisys Corporation 1995 . u Transaction Processing Conceptual Overview u . Unisys publication 7830 9960 . Roseville, MN. http public.support.unisys.com 2200 docs cp12.0 pdf 78309960 003.pdf ref within the same program while retaining a single common recovery mechanism. ref Unisys Corporation 2009 . u Universal Data System Administration and Support Reference Manual u . Unisys publication 7831 0737 . Roseville, MN. http public.support.unisys.com 2200 docs cp12.0 pdf 78310737 017.pdf ref File OS 2200 Database Architecture.jpg center The database managers are implemented as a Unisys OS 2200 operating system Subsystems protected subsystem and are called as a procedure from user programs and other subsystems. The implementation as a s ...   more details



  1. MADB

    Madb or MADB can refer to Mythology Medb , an Irish legendary figure in Proto Indo European religion, also called Queen Maeve Science and medicine madB, a protein encoding gene in Phycomyces blakesleeanus Mandibuloacral dysplasia with type B lipodystrophy, a type of Laminopathy Acronyms for databases Minor actinide property database Integrated Nuclear Fuel Cycle Information System Modules Magyar ag r database Microarray database Message Addressing Database, for WS Addressing Material Acquisition Database disambig ...   more details



  1. UniPROBE

    Orphan date March 2011 infobox biodatabase title UniPROBE logo File Database.png description database of protein binding microarray data on protein DNA interactions. scope organism center laboratory author Daniel E. Newburger pmid Newburger & al. 2009 ref name pmid18842628 released 2009 standard format url http uniprobe.org download webservice sql sparql webapp standalone license versioning frequency curation bookmark version The Universal PBM Resource for Oligonucleotide Binding Evaluation UniPROBE is database of DNA binding proteins determined by Protein microarray protein binding microarrays. ref name pmid18842628 cite journal quotes yes last Newburger first Daniel authorlink coauthors Bulyk Martha L year 2009 month Jan title UniPROBE an online database of protein binding microarray data on protein DNA interactions journal Nucleic Acids Res. volume 37 issue Database issue pages publisher location England issn pmid 18842628 doi 10.1093 nar gkn660 bibcode oclc id url pmc language eng format accessdate laysummary laysource laydate quote ref ref name pmid21037262 cite journal quotes yes last Robasky first Kimberly authorlink coauthors Bulyk Martha L year 2011 month Jan title UniPROBE, update 2011 expanded content and search tools in the online database of protein binding microarray data on protein DNA interactions journal Nucleic Acids Res. volume 39 issue Database issue pages D124 8 publisher location England issn pmid 21037262 doi 10.1093 nar gkq992 bibcode oclc id url pmc 3013812 language eng format accessdate laysummary laysource laydate quote ref See also Protein microarray DNA binding domain References references External links http uniprobe.org Category Biological databases Category Microarrays Category Proteins Biodatabase stub ...   more details



  1. Artade

    Orphan date January 2011 infobox biodatabase title ArtadeDB logo File Database.png description ARabidopsis Tiling Array based Detection of Exons scope organism Arabidopsis Thaliana center laboratory Phenome Informatics Team, Functional Genomics Research Group, Genomic Sciences Center, Japan. author Tetsuro Toyoda pmid Toyoda & al. 2005 ref name pmid16098113 released standard format url http omicspace.riken.jp ARTADE download webservice sql sparql webapp standalone license versioning frequency curation bookmark version ARTADE ARabidopsis Tiling Array based Detection of Exons is a database for the annotation of genome wide DNA microarray tiling array data in Arabidopsis thaliana Arabidopsis ref name pmid16098113 cite journal quotes yes last Toyoda first Tetsuro authorlink coauthors Shinozaki Kazuo year 2005 month Aug title Tiling array driven elucidation of transcriptional structures based on maximum likelihood and Markov models journal Plant J. volume 43 issue 4 pages 611 21 publisher location England issn 0960 7412 pmid 16098113 doi 10.1111 j.1365 313X.2005.02470.x bibcode oclc id url language eng format accessdate laysummary laysource laydate quote ref See also DNA microarray References references External links http omicspace.riken.jp ARTADE Category Biological databases Category Gene expression Category Microarrays Biodatabase stub ...   more details



  1. List of bioinformatics companies

    & probe design , DNA microarray microarray design, glycan structure identificatin, plasmid map drawing and tissue microarray data analysis. Qlucore Qlucore Omics Explorer is a bioinformatics software ... and other sequence search tools. VADLO Search engine for bioinformatics software, databases and online ...   more details



  1. FGED Society

    on Microarray Gene Expression Databases in recognition of the need to establish standards for sharing and storing data from DNA microarray experiments. Originally named the MGED Society, the society .... Founded in 1999 as the Microarray Gene Expression Data MGED Society, this organization changed ... Microarray Gene Expression Data Society and obtained permanent charity status in 2007. The MGED name was legally changed in 2007 to Microarray and Gene Expression Data Society to emphasize a broader ... the Society s scope beyond microarray technology and gene expression applications, yet still retain ... specifications pertaining to DNA microarray experiments. These standards are designed to improve ... science research community. MIAME MIAME Minimal Information About a Microarray Experiment is a data content standard that describes what information is needed to adequately document a DNA microarray experiment for the purpose of interpretation and replication of the results. MAGE OM MicroArray and Gene Expression MAGE OM MicroArray Gene Expression Object Model is a data exchange and data modeling standard for use in encoding data from microarray experiments for the purpose of export and import into software tools and databases via XML files. MAGE OM is a platform independent model implemented ... components of a DNA microarray experiment. ref cite web url http mged.sourceforge.net ontologies ...   more details



  1. Biological database

    Inappropriate tone date March 2010 Biological databases are libraries of life sciences information, collected ... research areas including genomics , proteomics , metabolomics , microarray gene expression, and phylogenetics . ref cite journal author Altman RB title Building successful biological databases journal ... in biological databases includes gene function, structure, localization both cellular and chromosomal ... library digital libraries are important for understanding biological databases. Biological database ... delimited records, and XML structures. Cross references among databases are common, using database Accession number bioinformatics accession numbers. Overview Biological databases are an important ... and specialized databases. This sometimes makes it difficult to ensure the consistency of information. Biological databases cross reference other databases with Accession number bioinformatics accession ... biological databases is a special yearly issue of the journal Nucleic Acids Research NAR . The http ... available on line databases related to biology and bioinformatics . Working of Database ... . Problems associated with protein databases Since discovery in the area of protein structure has ... . Species specific databases Species specific databases are available for some species, mainly ... database. Other popular species specific databases include, Flybase http flybase.bio.indiana.edu for Drosophila ... briggsae . See also List of biological databases Biobank Gene bank National Center for Biotechnology ... index.php Main Page Wiki of biological databases http www.oxfordjournals.org nar database c Interactive list of biological databases , classified by categories, from Nucleic Acids Research , 2010 http www.gpse.org Genome Proteome Search Engine to search across biological databases http www.biodbs.info DBD Database of Biological Databases http camera.calit2.net index.php CAMERA Cyberinfrastructure ... Category Biological databases Category Bioinformatics ar es Base de datos biol gica ...   more details



  1. Interferome

    experiments and molecular biology databases to gain a detailed understanding of interferon biology ... public and inhouse DNA microarray microarray and proteome proteomic datasets. Tools Interferome offers ... signatures in microarray data Gene Ontology analysis and annotation Normal tissue biology tissue expression ... Category Biological databases Category WikiProject Molecular and Cellular Biology articles ...   more details



  1. VxInsight

    orphan date February 2009 VxInsight is a Data mining knowledge mining tool developed by Sandia National Laboratories with the Institute for Scientific Information . It allows the user to visualize the relationship between groups of objects in large databases as a 3D landscape. In what Hillier et al. call a pioneering study, ref http www.genome.org cgi content full 15 12 1651 Genomics in C. elegans So many genes, such a little worm Hillier et al. 15 12 1651 Genome Research Bot generated title ref VxInsight has been used to analyze gene expression i.e. microarray data across a number of conditions in Caenorhabditis elegans C. elegans . Using VxInsight, Kim et al. were able to cluster genes into mounts with coherent functions, and were also able to make novel observations, such as the finding that distinct classes of transposons such as Tc3 and Mariner transposons appear to be differentially regulated during development. ref http www.scienceonline.org cgi content full 293 5537 2087 ref References Reflist External links http www.cs.sandia.gov dkjohns JIIS Vx Intro.html VxInsight Sandia National Laboratories http iv.slis.indiana.edu lm lm vx insight.html InfoVis Cyberinfrastructure VxInsight Tutorial with a number of screenshots http citeseer.ist.psu.edu 579272.html Domain Visualization Using VxInsight for Science and Technology Management Category Database administration tools database software stub ...   more details



  1. MicrobesOnline

    Orphan date February 2009 The MicrobesOnline website is a resource for comparative and functional genomics that serves the scientific community for the analysis of microbial genes and genomes. The website, created by the Virtual Institute for Microbial Stress and Survival VIMSS a Department of Energy Genomics GTL project was originally developed to aid analysis of the Environmental Stress Pathway Project ESPP but has been open to the public since 2003 due to is broader utility to the scientific community . MicrobesOnline offers Homologs, PDBs, domains & families, metabolic maps and operon predictions Tree based browser with pre computed phylogenies for all gene families Build your own sequence alignments and phylogenetic trees from Gene Carts Microarray data up regulated genes and operons, and overlays on metabolism See also Integrated Microbial Genomes System IMG External links http microbesonline.org MicrobesOnline home page reference http www.genome.org cgi content abstract 15 7 1015 The MicrobesOnline Web site for comparative genomics http img.jgi.doe.gov IMG home page reference http nar.oxfordjournals.org cgi content abstract 34 suppl 1 D344 Nucleic Acids Research, 2006, Vol. 34, Database issue D344 D348 genomics footer microbiology stub genetics stub Category Genome projects Category Bioinformatics Category Biological databases ...   more details



  1. NONCODE

    Orphan date January 2012 infobox biodatabase title NONCODE logo File Database.png description annotation of long noncoding RNA s. scope organism center laboratory author Dechao Bu pmid Bu & al. 2012 ref name pmid22135294 released 2011 standard format url http www.noncode.org download webservice sql sparql webapp standalone license versioning frequency curation bookmark version v3.0 The NONCODE database is a collection of expression and functional Long non coding RNA lncRNA data obtained from re annotated microarray studies. ref name pmid22135294 cite journal quotes yes last Bu first Dechao authorlink coauthors Yu Kuntao, Sun Silong, Xie Chaoyong, Skogerb Geir, Miao Ruoyu, Xiao Hui, Liao Qi, Luo Haitao, Zhao Guoguang, Zhao Haitao, Liu Zhiyong, Liu Changning, Chen Runsheng, Zhao Yi year 2012 month Jan title NONCODE v3.0 integrative annotation of long noncoding RNAs journal Nucleic Acids Research volume 40 issue D1 pages D210 D215 publisher location issn pmid 22135294 doi 10.1093 nar gkr1175 bibcode oclc id url language ENG format accessdate laysummary laysource laydate quote ref References references See also Long non coding RNA lncRNA External links http www.noncode.org Biodatabase stub Category Biological databases Category RNA Category Non coding RNA ...   more details



  1. The Small Molecule Pathway Database

    url http www.smpdb.ca accessdate 11 January 2012 ref SMPDB is part of a suite of metabolomics databases ... www.uniprot.org UniProt website http t3db.org T3DB website Category Metabolomic databases Category Medical databases Category Biological databases ...   more details




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