The OpenBioinformaticsFoundation is a non profit , volunteer run organization focused on supporting open source programming in bioinformatics . The mission of the foundation is to support development of open source toolkits for bioinformatics, organize and run the BioinformaticsOpen Source Conference , and generally assist in the development and promotion of open source software development in the life sciences. The foundation hosts servers for mailing lists, websites, and code repositories for the following open source projects BioDAS see http www.biodas.org XML Infrastructure for exchanging genome annotations BioJava Java toolkit BioMOBY Data and application execution through web services BioPerl Perl toolkit http www.gmod.org biopipe BioPipe Pipelines and workflow project for creating bioinformatics protocol BioPython Python toolkit BioRuby Ruby toolkit BioPHP BioSQL RDBMS Database schema for storing sequences, annotations, taxa data. OBDA see http obda.open bio.org a standard for sequence data access locally, remotely, and via RDBMS EMBOSS Sequence analysis toolkit. See also List of Open Source Bioinformatics software Bioinformatics Bioinformatics.org http www.bioinformatics.org Generic Model Organism Database GMOD http www.gmod.org http www.bioinformatics.org bioc sharp wiki BioC &mdash Biolibrary for C External links OBF http open bio.org website http www.bioinformatics.cc Bioinformatics News Category Bioinformatics organizations Category Free software project foundations science org stub pt OpenBioinformaticsFoundation ... more details
Website Linux , Mac OS X , Windows LGPL LGPL v2.1 OpenBioinformaticsFoundation BioMOBY registry ... 331 Articles Web License OpenBioinformaticsFoundation BioPerl Perl language toolkit http www.bioperl.org Website Cross platform Artistic License & GPL OpenBioinformaticsFoundation BioPHP PHP language toolkit http genephp.sourceforge.net Website Platform License OpenBioinformaticsFoundation Biopython ... http www.biopython.org DIST LICENSE Biopython License OpenBioinformaticsFoundation BioRails a data ... Platform GNU GPL v2 or Ruby license OpenBioinformaticsFoundation https wiki.nci.nih.gov display ...This is a list of open source bioinformatics software with articles in Wikipedia. class wikitable Software Description Resources Platform License Developer .NET Bio A language neutral bioinformatics toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists. http ... Bio4j is a bioinformatics platform and graph based database built around most data available in UniProt ... Bioclipse Visual platform for Cheminformatics chemo and bioinformatics based on the Eclipse software ... Artistic License 2.0 Fred Hutchinson Cancer Research Center http www.cs.transy.edu nsmith Bioinformatics ... pkg list.html cat bioinformaticsBioinformatics software in Haskell Linux , Mac OS X , Windows GPL , LGPL ... cgi content abstract 35 suppl 1 D561 Articles Platform License European Bioinformatics ... , Mac OS X , Windows Apache License http www.labkey.org LabKey Software Foundation OpenClinica software ... UGENE integrated bioinformatics tools http ugene.unipro.ru Website http youtube.com uniprougene ... alignment software List of open source healthcare software List of freeware health software List of molecular ... category bio Free Biology Software Free Software Directory Free Software Foundation http bioinformatics.ca links directory Bioinformatics Links Directory Category Free software lists and comparisons Category Bioinformatics software Category Free bioinformatics software ... more details
the 1980s. ref name obf main cite web title OpenBioinformaticsFoundation About us url http www.open bio.org wiki Main Page work Official website publisher OpenBioinformaticsFoundation accessdate 10 ... to maintain this tradition and create further opportunities, the non profit OpenBioinformaticsFoundation ref name obf main have supported the annual BioinformaticsOpen Source Conference BOSC since 2000. ref name obf bosc cite web title OpenBioinformaticsFoundation BOSC url http www.open bio.org wiki BOSC work Official website publisher OpenBioinformaticsFoundation accessdate 10 May 2011 ref ... List of bioinformatics companies bioinformatics companies or public institutions. Open source bioinformatics ... bioinformatics and the range of open source software available, regardless of their funding arrangements ... models for assisting with the challenge of bioinformation integration. The List of open source bioinformatics ... of scientific journals in bioinformatics List of open source bioinformatics software List of nucleic ... Bioinformatics Organization http www.embnet.org EMBnet http www.open bio.org OpenBioinformaticsFoundation genomics footer Biology footer Technology Computer science Category Bioinformatics Category ...for the journal Bioinformatics journal Image Genome viewer screenshot small.png thumbnail right 220px ... of the human genome is one of the greatest achievements of bioinformatics. Evolutionary biology Bioinformatics IPAc en audio en us bioinformatics.ogg b a . o n f m t k s is the application of computer science and information technology to the field of biology and medicine . Bioinformatics ... theory, circuit theory, and statistics. Bioinformatics generates new knowledge of biology ... , SQL , CUDA , MATLAB , and Microsoft Excel . Introduction Bioinformatics was applied in the creation ... picture of these activities. Therefore, the field of bioinformatics has evolved such that the most ... web title Concepts, Historical Milestones and the Central Place of Bioinformatics in Modern Biology ... more details
The Open Web Foundation OWF is a non profit organization dedicated to the development and protection of specifications for emerging web technologies. The foundation follows an open source model similar to the Apache Software Foundation ASF . Individuals participating include Geir Magnusson , vice president and board member at Apache, and Tim O Reilly , CEO of O Reilly Media . History The Open Web Foundation was announced July 24, 2008 at O Reilly Open Source Convention the O Reilly Open Source Convention ... url http openwebfoundation.org 2008 07 announcing the open web foundation.html title Announcing the Open Web Foundation publisher Open Web Foundation ref ref cite web url http www.eweek.com c a Linux and Open Source Open Web Foundation to Keep Data Open title Open Web Foundation to Keep Data Open publisher eWeek ref ref cite web url http news.cnet.com 8301 17939 109 9998776 2.html title Open Web Foundation a new club for standards makers publisher CNET ref ref cite news url http www.washingtonpost.com wp dyn content article 2008 07 24 AR2008072401922.html title Open Web Foundation Officially ..., 2010 ref ref cite web url http www.thestandard.com news 2008 07 25 open web foundation formed title Open Web Foundation formed publisher The Industry Standard ref Criticism There have been accusations made that the Open Web Foundation are bypassing the Internet Engineering Task Force IETF or other ..., the Open Web Foundation is supported by the following companies and organizations BBC Facebook Google ... The Open Web Foundation is a membership based organization. Members of the Foundation elect a nine person ... group open web discuss browse thread thread ae7560a9bbe6304c ref Brady Brim DeForest Tantek Celik DeWitt Clinton Chris Messina open source advocate Chris Messina David Recordon Lawrence Rosen attorney Lawrence Rosen David Rudin Gabe Wachob See also Apache Software Foundation DataPortability Open standard References Reflist External links http openwebfoundation.org The Open Web Foundation Web Site ... more details
The Foundation for Open Project Documentation ref Shalyto Shalyto A. http www.codeproject.com gen design nifopd.asp Foundation for Open Project Documentation at Code Project ref is an organization. Its main idea is to create detailed and public documentation for all stages of software creation. The foundation was established in 2002 on the grand opening of the semifinals of ACM International Collegiate Programming Contest in Saint Petersburg by Anatoly Shalyto . This foundation was announced on the Linux Summit 2004 ref http is.ifmo.ru foundation linux Part of the program of Linux Summit 2004 ref ref Shalyto Shalyto A. Naumov L. Foundation for Open Project Documentation. http is.ifmo.ru foundation en Presentation.en.ppt Presentation for Linux Summit 2004 ref , Russian Outsourcing and Software ... possible to use real project for study purposes Application Foundation for Open Project Documentation gives a project a greater understandability and re usability potential, than open source software Open Source foundation . It is loosely connected with Free Software Foundation . OpenDoc project .... References references External links http is.ifmo.ru foundation en Foundation for Open Project Documentation at Programming Technologies Department of SPbSU ITMO website http is.ifmo.ru foundation en OpenDoc projects at Programming Technologies Department of SPbSU ITMO website Category Open content ... Summit ref and Open Source Forum Russia 2005 ref http is.ifmo.ru science opensource Photos from Open Source Forum Rissua 2005 ref . Project documentation development approbation in the context of this foundation was made in projects created using Switch technology , intended for supporting ... with open project documentation. ref ref http is.ifmo.ru unimod projects en Projects, created using UniMod tool with open project documentation. ref . Image Shalyto Linux Summit 2004.jpeg thumb 250px ... project modification becomes easier and safer The motivation for making documentation open is considered ... more details
Infobox Non profit Non profit name The Open Knowledge Foundation Non profit logo vector logo Non profit ... id 05133759 ref name about okf cite web last Open Knowledge Foundation url http okfn.org about title ... , Jonathan Gray Open Knowledge Foundation Jonathan Gray area served International focus Open knowledge ... http www.okfn.org tax exempt dissolved footnotes The Open Knowledge Foundation OKF is a not for profit ... 24 May 2004 ref cite web url http blog.okfn.org 2004 05 24 open knowledge foundation launched title Open Knowledge Foundation Weblog Blog Archive Open Knowledge Foundation Launched accessdate 2008 02 14 ref in Cambridge , United Kingdom UK . The foundation has published the Open Knowledge Definition ... Knowledge Foundation are ref name about okf Promoting the idea of open knowledge, both what .... The company Open Knowledge Foundation Limited was incorporated in 20 May 2004. People Prose section date April 2011 The current Open Knowledge Foundation Board is made up of James Casbon Martin Keegan Jordan S. Hatcher Becky Hogge Paula Le Dieu Rufus Pollock Ben Laurie The Open Knowledge Foundation ... last Open Knowledge Foundation title lists.okfn.org Mailing Lists url http lists.okfn.org mailman ... and Outreach Partners ... Open Knowledge Foundation ref OKFN has produced the Open Knowledge Definition ... Access Info Europe, together with the Open Knowledge Foundation, are holding a public consultation ... are listed below ref cite web url http www.okfn.org projects title projects The Open Knowledge Foundation accessdate 2008 02 14 Open Knowledge Foundation Projects ref File Geo datos.jpeg frame Banner ... annually since 2007. ref cite web last Open Knowledge Foundation title About url http okcon.org ... Open Knowledge Foundation http www.okfn.org The Open Knowledge Foundation official website cite web url http blog.okfn.org title Open Knowledge Foundation Weblog accessdate 2008 02 14 cite web url http ... based in Cambridge Category Companies based in Cambridge de Open Knowledge Foundation es Fundaci n ... more details
Infobox Organization name Open Source Geospatial Foundation image OSGeo.svg image border size 200px caption map msize mcaption abbreviation OSGeo motto Your Open Source Compass formation February 2006 extinction type NGO status purpose Open source geospatial software headquarters location region served ... cs Open Source Geospatial Foundation de Open Source Geospatial Foundation es Open Source Geospatial Foundation fr Open Source Geospatial Foundation ko it OSGeo ml pl Open Source Geospatial Foundation sr zh ... affiliations num staff num volunteers 1000 budget website http www.osgeo.org remarks The Open Source Geospatial Foundation OSGeo , is a non profit non governmental organization whose mission is to support and promote the collaborative development of open geospatial technology technologies and data. The foundation was formed in February 2006 to provide financial, organizational and legal support to the broader Free Software Free and open source geospatial community. It also serves as an independent ... governance inspiration from several aspects of the Apache Foundation , including a membership composed of individuals drawn from foundation projects who are selected for membership status based on their active contribution to foundation projects and governance. The foundation pursues goals beyond software development, such as promoting more Open access publishing open access to government produced ... project. Education and training are also addressed. Various committees within the foundation ... Client Mapbender MapGuide Open Source OpenLayers Metadata Catalog GeoNetwork opensource Retired Projects http communitymapbuilder.org Community MapBuilder Governance The OSGeo Foundation is thoroughly ... conference called http foss4g.org FOSS4G Free and Open Source Software for Geospatial. Starting ... and a conference exhibition. Sol Katz Award The Sol Katz Award for Geospatial Free and Open Source ... more details
Image Owfacade.JPG thumb right 170px Facade of Open Windows Open Windows Foundation or Ventanas Abiertas ... of the foundation is to Open Windows of opportunity for the disadvantaged children of San Miguel Due as ..., there are five full time teachers on staff. The Foundation also depends on work from volunteers. External links http openwindowsfoundation.com Open Windows Foundation http www.idealist.org if i en av ... thumb left 250px The library room with over 7,000 books. The Foundation first opened in 2001 ... were donated from a library project that had recently closed in Dulce River Rio Dulce, Guatemala . The Foundation ... for pleasure. Over the years, Open Windows continued to accumulate students, books, funds, and other ... donated 10 computers to Open Windows. This donation allowed Open Windows to expand their services to allowing students to use computers for homework and offering computer classes. Open Windows ... for an additional 10 computers prompted the building of a second story computer center at Open Windows ... 2009, Open Windows opened a teen room in order to expand their services to older children in the community. Programs Open Windows currently provides four primary programs the after school program ... of the five teachers at Open Windows. Because of the close relationship between Open Windows and the local schools, homework for the students is often designed with the specific resources of Open ... activity as a group. Every afternoon the teachers at Open Windows use a book read aloud to ground ... 2009, Open Windows began a formal teen program in fall 2009. This program is aimed at opening the center .... Besides providing educational resources for the teens, Open Windows provides activities aimed at creating a safe place for teens to socialize. Location Open Windows is located in San Miguel Due as ... thumb right 240px A volunteer reads to the kids in the library room. Today, Open Windows is led by director and co founder Teresa Qui onez. The administration of the Foundation is made up ... more details
cleanup date April 2011 advert date November 2011 The Open Media Foundation OMF is an United States American , non profit organization non profit , Charitable organization charitable , multimedia organization that provides the means necessary for people to create, edit, and share their visions across various media platforms. ref Personal Interview, Tony Shawcross, 18 February 2010. ref OMF s main goal ... tools and resources, primarily through Denver Open Media. ref OMF website http openmediafoundation.org ref File OMF logo.png thumb OMF Logo Open Media Foundation s Mission Statement OMF s mission statement .... ref New Brand, Same Mission Open Media Foundation. Open Media Foundation. Web. 26 February 2010. http www.openmediafoundation.org services united . ref Open Media Foundation attempts to divert some .... History of Open Media Foundation In 2001, Tony Shawcross, Executive Director of the Open Media Foundation ... Winner Launches Open Media Foundation . Idea Lab. Retrieved 27 September 2011. http www.pbs.org idealab 2009 12 2008 knight news challenge winner launches open media foundation335.html ref In 2009, the parent organization changed its name to the Open Media Foundation, dropping Deproduction and Civic Pixel. Denver Open Media remains an independent, community run project of the parent company, Open Media Foundation. ref Archived Deproduction Website, History section. http web.archive.org web 20080215210100 deproduction.dnsalias.org ref In 2010, OMF launched the Open Media Project, the result of their two year Knight News Challenge Grant. The Open Source Software was beta tested in 6 other cities ... models into community media. In 2006 OMF launched Denver Open Media DOM , with an independent ... based community media tools and sharing content. ref Open Media Project website http www.openmediaproject.org ... www.openmediafoundation.org Open Media Foundations http www.denveropenmedia.org Denver Open Media http denverevolution.org denverevolution& 93 http openmediafoundation.org newsletter archive Open Media ... more details
Infobox Organization name Open Networking Foundation image image border size caption map msize mcaption abbreviation ONF motto formation Start date and years ago 2011 03 21 extinction type 501 c 501 c 6 501 c 6 Nonprofit organization NPO status purpose Software network optimization headquarters location coords region served membership language leader title Executive Director leader name Dan Pitt ref name ONF01 main organ parent organization affiliations num staff num volunteers budget key people website URL www.opennetworkingfoundation.org remarks The Open Networking Foundation ONF is a nonprofit, mutually beneficial trade organization, founded by Deutsche Telekom , Facebook , Google , Microsoft , Verizon , and Yahoo to improve networking through Software Defined Networking SDN . ref cite web title Open Networking Foundation Formed to Speed Network Innovation url http www.opennetworkingfoundation.org ?p 7 accessdate 24 March 2011 ref The standards setting group was formed out of recognition that cloud computing will blur the distinctions between computers and networks. ref http www.nytimes.com 2011 03 22 technology internet 22internet.html New York Times Open Networking Foundation Pursues New Standards. Markoff. March 22, 2011. ref The initiative is meant to speed innovation through simple software changes in telecommunications networks, wireless networks, data centers and other networking areas. ref http www.computerworld.com.au article 380663 google other titans form open networking foundation ?fp 4&fpid 78268965 ComputerWorld Google and other titans form Open Networking Foundation. Noyes, March 23, 2011. ref Member companies include Broadcom , Brocade , Ciena , Cisco , Citrix , Dell , Deutsche Telekom , Ericsson , Extreme Networks , Facebook , Force10 , Google , Hewlett ...?id 1410205 cloud.itbusinessnet.com Open Networking Foundation Formed to Speed Network ... in 2012 was discussed by Urs H lzle at the Open Networking Summit in April, 2012. ref Levy, Steven ... more details
distinguish Free Software Foundation The Open Software Foundation OSF was a not for profit organization ... Research Act of 1984 to create an open standard for an implementation of the UNIX operating system. ref cite press release title New Foundation to Advance Software Standards, Develop and Provide Open Software Environment publisher Open Software Foundation date May 17, 1988 url http groups.google.com ... to be close to USL. The executive staff of the Open Software Foundation included David Tory, President ..., CDE Motif, was announced. ref cite press release publisher Open Software Foundation date September ... , neither is it associated with the technology non profit Open Software Foundation based in Washington, DC ref cite web title Open Software Foundation year 2008 publisher Open Systems, Inc. url http ... States ar cs Open Software Foundation de Open Software Foundation es Open Software Foundation fr Open Software Foundation ko it Open Software Foundation ja Open Software Foundation pl Open Software Foundation pt Open Software Foundation zh ... of merged UNIX system efforts by AT&T and Sun Microsystems . The foundation s original sponsoring ... s initial Board of Directors. One of the Seven Principles was declaration of an Open Process whereby ..., five Open Process projects were named. The organization was seen as a response to the collaboration ... a month later. ref cite press release title DIGITAL DELIVERS ON THE OPEN ADVANTAGE PROMISE OF OSF ... were produced primarily by OSF included ODE, the Open Development Environment a flexible development, build and source control environment TET, the Test Environment Toolkit an open framework for building .... ODE and TET were made available as open source. TET was produced as a result of collaboration between OSF, UNIX International and the X Open Consortium. All the OSF technologies had corresponding ..., the Common Open Software Environment COSE initiative was announced by the major players in the UNIX ... more details
university name Intercultural Open University Foundation native name latin name image File IOUFlogo.png ... Open University Foundation IOUF is an international non profit charitable Foundation nonprofit organization foundation that provides a mentored educational experience for post graduate and graduate ... provided by the founder of the Intercultural Open University Foundation, Jan R. Hakemulder, PhD. Jan ... Partial publication list ref The Intercultural Open University Foundation is registered as a non profit foundation in the United States ref http corp.delaware.gov File 4750897 ref and maintains offices in Arden, Delaware and Granada , Spain . Although it originally obtained registration as a foundation ... Announcement of agreement between Universidad Azteca and the Intercultural Open University Foundation ... open university foundation iou at a glance IOUF Mission Statement ref Its status as a not for profit organization confers favorable tax status on activities undertaken in pursuit of Foundation goals. ref http www.ioufoundation.org ref History The Intercultural Open University Foundation was established ... suffering the Intercultural Open University Foundation was the result. Distributed, or distance ... president of the intercultural open university foundation ref ref http www.psdupont59.com news.htm ... The Intercultural Open University Foundation is a member of the Alternative Education Resource ... 2004031209160500.htm ref Academics Intercultural Open University Foundation offers programs in cultural ... L. Gandhi, PhD in Sociology, Intercultural Open University Foundation. Editor of the ANUVIBHA Reporter ... links http www.ioufoundation.org Intercultural Open University Foundation Website Category Foundations ... index php?option com content&view article&catid 47 3Aprograms&id 22825 3Aintercultural open university ... index.php component content article 46 iou news 216 iou foundation contributes to reforestation ... foundation , the IOUF is an independent legal entity with a stated mission of serving the public interest ... more details
Image voeflogo.png right 100px Virginia Open Education Foundation VOEF is a not for profit 501 c 3 corporation dedicated to bringing curriculum and education al content resources to the K 12 students of the Commonwealth of Virginia through open education . It was started and is currently directed by Middlesex County, Virginia Middlesex County Public Schools Technology Director Mark Burnet. Stated mission The mission of this non profit organization is to bring curriculum and educational content resources to the students of Virginia. The manner in which this is accomplished will be to assess, fund and deploy materials and content held in creative commons. Delivery and collaborative tools and methods would be provided to educational institutions within the Commonwealth. It is not intended that this would supplant or encroach on the mission of other educational organizations, but to foster an interoperable framework for resource users of a license free learning environment. It is the philosophy of this organization to support a service business model using open source content, computer software ... must be reviewed and adopted in a framework of the scientific method. Virginia Open Textbook Project ... be accessible Internet online through content management system s. Burnet advocates that switching to open ... 2007 hj702 Joint Resolution 702 , which would form a joint subcommittee to consider open education ... 2007 20Content openeducation.htm Open Education Resources advisory committee within the http ... , would authorize the establishment of open education resource centers. Such centers would be able to be either ... footnotes using the ref and ref tags and the tag below references See also Open educational resources Cape Town Open Education Declaration External links http www.voef.org official site http ... 2007 20Content metcalmat07.htm JCOTS Committee on Open Educational Resources, Virginia General Assembly ... Open access publishing Category Open content projects Category Educational organizations based in the United ... more details
Infobox journal cover discipline Bioinformatics abbreviation BMC Bioinformatics website http www.biomedcentral.com bmcbioinformatics publisher BioMed Central country United Kingdom UK ISSN 1471 2105 impact 3.03 impact year 2010 BMC Bioinformatics is an online Open access publishing open access scientific journal that publishes original, peer review peer reviewed research in bioinformatics . The journal is part of a series of BMC journals published by the UK based publisher BioMed Central . The journal was founded in 2000 publishing it first article on Metabolic flux analysis . ref name pmid11001586 cite journal author Edwards JS, Palsson BO title Metabolic flux balance analysis and the in silico analysis of Escherichia coli K 12 gene deletions journal BMC Bioinformatics volume 1 issue pages 1 year 2000 pmid 11001586 pmc 29061 doi url ref In 2008 the journal published 606 articles and 1 review. The journals that cited BMC Bioinformatics the most were Nucleic Acids Research , Bioinformatics journal Bioinformatics , BMC Genomics , PLoS Computational Biology and Genome Biology . ref Journal Citation Reports 2008 Science Edition. ISI Web of Science. ref External links http www.ncbi.nlm.nih.gov pmc journals 13 PubMed Central archive References reflist sci journal stub Category BioMed Central academic journals Bioinformatics Category Bioinformatics ... more details
Infobox journal title Bioinformatics cover discipline Computational biology abbreviation Bioinformatics editors Alex Bateman , Alfonso Valencia publisher Oxford University Press frequency 24 issues year history 1998 present ISSN 1367 4803 eISSN 1460 2059 impact 4.926 impact year 2009 openaccess website http bioinformatics.oxfordjournals.org Bioinformatics is a peer review peer reviewed scientific journal publishing original research and software in computational biology . It is the official journal of the International Society for Computational Biology , together with PLoS Computational Biology . Authors can pay extra for Open access publishing open access and are allowed to self archiving self archive after 1 year. Bioinformatics was established in 1998 and has been published since by Oxford University Press . The Editor in chief editors are Alex Bateman and Alfonso Valencia . ref http www.oxfordjournals.org our journals bioinformatics editorial board.html Bioinformatics Editorial Board ref References reflist External links Official http bioinformatics.oxfordjournals.org Category Biology journals Category Publications established in 1998 Category Bioinformatics Category Biweekly journals Category Oxford University Press academic journals Category English language journals biology journal stub ... more details
notability date June 2010 Infobox journal title Evolutionary Bioinformatics cover editor Dennis Wall discipline Computational biology Computational evolutionary biology peer reviewed Yes language English language English formernames abbreviation publisher Libertas Academica country New Zealand frequency history 2005 Present openaccess Yes license impact impact year website http la press.com journal.php?journal id 17 link1 link1 name link2 link2 name RSS atom JSTOR OCLC 179811074 LCCN CODEN ISSN 1176 9343 eISSN boxwidth Evolutionary Bioinformatics is a peer review ed Open access publishing open access academic journal focusing on computational biology in the study of evolution . The journal was founded by the director of the New Zealand Bioinformatics Institute, ref http www.bioinformatics.org.nz ref Allen Rodrigo in 2005 and is currently edited by Dennis Wall, ref http www.la press.com dennis wall eic17 ref the Director of the Computational Biology Initiative at Harvard Medical School . ref http wall.hms.harvard.edu ref The journal serves as the official publication of the institute, and is published by Libertas Academica . Impact Factor Since 2008 , Evolutionary Bioinformatics have an Impact Factor . Its value is 2.684. ref http www.la press.com evolutionary bioinformatics journal j17 ref This represents a solid gain on the 2009 figure of 1.889. Journal Citation Reports show a total of 1368 citations. Within the Mathematical and Computational Biology category, Evolutionary Bioinformatics ... Species Identification. Evolutionary Bioinformatics 2008 4 193 201. 9975 Views 2. O. Bastien ... Bioinformatics 2008 4 41 45. 8094 Views 3. Ludovic Orlando, Catherine H nni and Christophe .... Evolutionary Bioinformatics 2007 3 45 51 7326 Views Indexing The journal is indexed in columns list ... Contents Life Sciences Directory of Open Access Journals EBSCO Academic Search Complete Embase ... this journal Evolutionary Bioinformatics website Category Evolution journals Category Publications ... more details
NOTOC Structural bioinformatics is the branch of bioinformatics which is related to the analysis and prediction of the three dimensional structure of biological macromolecules such as proteins , RNA , and DNA . It deals with generalizations about macromolecular 3D structure such as comparisons of overall folds and local motifs, principles of molecular folding, evolution, and binding interactions, and structure function relationships, working both from experimentally solved structures and from computational models. The term structural has the same meaning as in structural biology , and structural bioinformatics can be seen as a part of computational structural biology. genomics footer See also columns list 2 MMDB Protein Data Bank SCOP STING Molecular modelling List of software for molecular mechanics modeling Molecular Conceptor CASP References Books Bourne, P.E., and Gu, J. 2009 Structural Bioinformatics 2nd edition , John Wiley & Sons, New York, ISBN 978 0 470 18105 8 Bourne, P.E., and Weissig, H. 2003 Structural Bioinformatics , Wiley ISBN 0 471 20199 5 Leach, Andrew 2001 Molecular Modelling Principles and Applications 2nd edition , Prentice Hall, ISBN 978 0582382107 Hallmark publications cite journal journal RNA volume 7 pages 499&ndash 512 year 2001 author Leontis NB, Westhof E. title Geometric nomenclature and classification of RNA base pairs doi 10.1017 S1355838201002515 pmid 11345429 pmc 1370104 issue 4 cite journal journal Adv Protein Chem volume 34 pages 167&ndash 339 year 1981 author Jane S. Richardson Richardson JS . title The anatomy and taxonomy of protein structure ... software KiNG , an open source Java kinemage viewer http www.mol.biol.ethz.ch wuthrich software molmol ... on line application http www.moltalk.org MolTalk , structural bioinformatics software http ... platform for structural bioinformatics http www.spadeweb.org SPADE the structural proteomics ... web servers for binding site level analysis Category Structural bioinformaticsbioinformatics ... more details
Orphan date February 2009 COI date April 2010 BioInformatics, LLC is a life science consulting firm , based in the United States , that provides market intelligence to companies serving the life science , medical device and pharmaceutical industries. It is headquartered in Arlington, Virginia and was founded in 1994 by William T. Kelly, President, and Karen Blaine, Chief Executive Officer. Bioinformatics studies may be commissioned privately by a single company which has exclusive rights to the data collected custom research or published on a non proprietary basis and sold to multiple companies published research . Published reports have focused on the topics of Life Science Product Mail order Catalogs , Advertising to Life Scientists, Brand Positioning, eCommerce Strategies, eMarketing , and others. History BioInformatics was founded by William T. Kelly and Karen Blaine in 1994 as a research and advisory firm employing a professional social network to collect and deliver market research to companies selling the tools of science. In 1997, the company launched The Science Advisory Board, one of the world s largest online panels of scientific experts. This global community currently consists of over 50,000 life science researchers, physicians and biomedical professionals. Starting in 2004, The Scientist magazine has annually selected BioInformatics, LLC to survey life scientists and to tabulate ... the sharing of knowledge to solve common business challenges. Today, BioInformatics publishes ... Foundation & The Ballston Science and Technology Alliance, January 6, 2009. Accessed September 30 ... Bioinformatics Integrators tap market helping government analyze biological data , WashingtonTechnology ... 28, 2002. Accessed April 28, 2008. External links http www.gene2drug.com Official Bioinformatics ... http finance.google.com finance?cid 8425683 Google Finance Bioinformatics Company Profile DEFAULTSORT Bioinformatics, Llc Category Companies established in 1994 Category Consulting firms Category Privately ... more details
orphan date July 2010 Integrative bioinformatics is a discipline of bioinformatics that focuses on problems of data integration for the life sciences . With the rise of high throughput HTP technologies in the life sciences, particularly in molecular biology , the amount of collected data has grown in an exponential fashion. Furthermore, the data is scattered over a plethora of both public and private Information repository repositories , and is stored using a large number of different file format formats . This situation makes the extraction of new knowledge from the complete set of available data very difficult. Integrative bioinformatics attempts to tackle this problem by providing unified access to life science data. Data that can be integrated include genomes , proteins , protein protein interaction data, annotations , gene expression data, phylogenies , Category Biology journals biological articles , and drug interaction data. Approaches Semantic web approaches Data warehousing approaches In the data warehousing strategy, the data from different sources are extracted and integrated in a single database. For example, various omics datasets may be integrated to provide biological insights into biological systems. Examples include data from genomics, transcriptomics, proteomics, interactomics, metabolomics. Ideally, changes in these sources are regularly synchronized to the integrated database. The data is presented to the users in a common format. One advantage of this approach is that data is available for analysis at a single site, using a uniform schema. Some disadvantages are that the datasets are often huge and are difficult to keep up to date. Other approaches See also Biological database Biological data visualization References references External links http journal.imbio.de Journal of Integrative Bioinformatics Category Bioinformatics Category Article Feedback 5 bioinformatics stub ... more details
The Open Source Digital Voting Foundation OSDV is a California based, United States pending Public benefit corporation Public Benefit Corporation . It was founded in November 2006 and incorporated in April 2007 in an effort to address issues surrounding electronic voting US e voting technology . The purpose of the OSDV is to create voting systems that are accurate, transparent, verifiable, and secure. Overview The OSDV operates as a non profit organization for the purposes of advancing open source designs and specifications any software or hardware that it creates is free. The work of the Foundation is done through a volunteer community including system and software developers, an outreach team, and experts in electronic voting technology and trustworthy computing . The OSDV Foundation s application IRS Form 1023 for tax exempt status pursuant to section 501 c 3 of the US internal revenue code is pending with the IRS asof 2011 1 lc 1 . Goals Provide clear, neutral, and sustainable public ownership of design specifications, draft standards, software code, hardware architecture, patents , and other intellectual properties and domains Establish an accountable and transparent decision making structure for the essential activities of the Foundation Promote activities designed to help grow ... capture the decision of the voter. As a result, the OSDV Foundation s projects are based on an open ... technology framework Solicit funding and public participation in order to continue the work of the Foundation Additionally, the foundation aims to restore trust ref http www.brookings.edu press ... or real polling. History The OSDV Foundation was founded in 2007 by E. John Sebes and Gregory Miller ... Foundation s first project is TrustTheVote. References reflist 2 External links http www.osdv.org OSDV Foundation Web site http www.trustthevote.org TrustTheVote Project Web site Category Free and open source software organizations Category Electronic voting ... more details
Infobox journal title Briefings in Bioinformatics cover editor Martin Bishop discipline Bioinformatics former names abbreviation Brief. Bioinform. publisher Oxford University Press country frequency Bimonthly history 2000 present openaccess license impact 9.283 impact year 2010 website http bib.oxfordjournals.org link1 http bib.oxfordjournals.org content current link1 name Online access link2 http bib.oxfordjournals.org archive link2 name Online archive JSTOR OCLC 44107488 LCCN CODEN BBIMFX ISSN 1467 5463 eISSN 1477 4054 Briefings in Bioinformatics is a Peer review peer reviewed scientific journal covering bioinformatics , including reviews of databases and analytical tools for genetics and molecular biology. It is published by Oxford University Press . Abstracting and indexing The journal is abstracted and indexed in columns list 2 Current Contents Life Sciences Abstracts on Hygiene and Communicable Diseases Animal Breeding Abstracts BIOSIS Previews Biological Abstracts Biotechnology Citation Index CAB Abstracts EMBASE Global Health ProQuest Science Citation Index Science Citation Index Expanded According to the Journal Citation Reports , the journal has a 2010 impact factor of 9.283, ranking it 5th out of 160 journals in the category Biotechnology & Applied Microbiology ref name WoS cite book year 2011 chapter Journals Ranked by Impact Biotechnology & Applied Microbiology title 2010 Journal Citation Reports publisher Thomson Reuters edition Science accessdate 2011 11 1 work Web of Science postscript . ref and 2nd out of 71 journals in the category Biochemical Research Methods . ref name WoS2 cite book year 2011 chapter Journals Ranked by Impact Biochemical Research Methods title 2010 Journal Citation Reports publisher Thomson Reuters edition Science accessdate 2011 11 1 work Web of Science postscript . ref References reflist External links Official http bib.oxfordjournals.org Category Bioinformatics Category Bimonthly journals Category Medical informatics journals ... more details
SCHEMA is a computational algorithm used in protein engineering to identify fragments of proteins called schemas that can be Homologous recombination Protein engineering recombined without disturbing the integrity of the proteins tertiary structure three dimensional structure . ref cite journal title Protein building blocks preserved by recombination last Voigt first CA et al journal Nature Structural Biology year 2002 month June volume 9 pages 553 558 doi 10.1038 nsb805 pmid 12042875 last2 Martinez first2 C last3 Wang first3 ZG last4 Mayo first4 SL last5 Arnold first5 FH issue 7 ref The algorithm calculates the protein protein interaction interactions between a protein s different amino acid residues to determine which interactions may be disrupted by swapping structural Protein domain domains of the protein. By minimizing these disruptions, SCHEMA can be used to engineer Chimera protein chimeric proteins that stably Protein folding fold and may have altered function relative to their parent proteins. ref cite journal title Structure guided recombination creates an artificial family of cytochromes P450 last Otey first CR journal PLoS Biology year 2006 month May volume 4 issue 5 page e112 doi 10.1371 journal.pbio.0040112 pmid 16594730 pmc 1431580 last2 Landwehr first2 M last3 Endelman first3 JB last4 Hiraga first4 K last5 Bloom first5 JD last6 Arnold first6 FH ref References reflist Category Bioinformatics ... more details
TennisEventInfo 2009 All Star Children s Foundation Sarasota Open date May 11 17, 2009 edition 1st location Longboat Key, Florida , United States champs flagicon GBR James Ward tennis James Ward champd flagicon DOM V ctor Estrella flagicon MEX Santiago Gonz lez tennis Santiago Gonz lez The 2009 All Star Children s Foundation Sarasota Open was a professional tennis tournament played on Tennis court Clay courts outdoor green clay courts . It was part of the 2009 ATP Challenger Tour . It took place in Longboat Key, Florida , United States between May 9 and May 17, 2009. Singles entrants Seeds class wikitable border 1 Nationality Player Ranking Seeding flag USA s Kevin Kim s s 103 s s 1 s flag USA Vince Spadea 110 2 flag USA Donald Young tennis Donald Young 162 3 flag AUS Carsten Ball 182 4 flag BEL Xavier Malisse 185 5 flag USA Scoville Jenkins 193 6 flag USA Michael Russell tennis Michael Russell 201 7 flag MEX Santiago Gonz lez tennis Santiago Gonz lez 207 8 Rankings are as of May 11, 2009. Other Entrants The following players received wildcards into the singles main draw flagicon USA Stephen Bass flagicon USA Ryan Harrison tennis Ryan Harrison flagicon USA Chris Klingemann flagicon USA Jesse Witten The following players received entry from the qualifying draw flagicon LTU Ri ardas Berankis flagicon AUS Bernard Tomic flagicon GBR James Ward tennis James Ward flagicon RSA Fritz Wolmarans ... main 2009 All Star Children s Foundation Sarasota Open Singles flagicon GBR James Ward tennis James Ward def. flagicon AUS Carsten Ball , 7 6 4 , 4 6, 6 3 Doubles main 2009 All Star Children s Foundation Sarasota Open Doubles flagicon DOM V ctor Estrella flagicon MEX Santiago Gonz lez tennis Santiago ... ITF search Category 2009 ATP Challenger Tour All Star Children s Foundation Sarasota Open Category Tennis tournaments in the United States Category Sarasota Open it All Star Children s Foundation Sarasota Open 2009 ... more details
TennisEvents2 2009 All Star Children s Foundation Sarasota Open s champ flagicon DOM V ctor Estrella br flagicon MEX Santiago Gonz lez tennis Santiago Gonz lez runner flagicon IND Harsh Mankad br flagicon USA Kaes Van t Hof score 6 2, 6 4 main 2009 All Star Children s Foundation Sarasota Open V ctor Estrella and Santiago Gonz lez tennis Santiago Gonz lez became the first champions of this tournament, after their won 6 2, 6 4 against Harsh Mankad and Kaes Van t Hof in the final. Seeds col begin col 2 flagicon AUS Carsten Ball flagicon USA Travis Rettenmaier Semifinals flagicon DOM V ctor Estrella flagicon MEX Santiago Gonz lez tennis Santiago Gonz lez Champions col 2 ol start 3 li flagicon IND Harsh Mankad flagicon USA Kaes Van t Hof Final li flagicon USA Lester Cook flagicon USA Michael Yani Semifinals col end Draw Draw key Draw 16TeamBracket Compact Tennis3 Byes RD1 First Round RD2 Quarterfinals RD3 Semifinals RD4 Finals RD1 seed01 1 RD1 team01 flagicon AUS Carsten Ball C Ball br flagicon USA Travis Rettenmaier T Rettenmaier RD1 score01 1 4 RD1 score01 2 7 RD1 score01 3 10 RD1 seed02 RD1 team02 flagicon USA Ryler DeHeart R DeHeart br flagicon PHI Treat Conrad Huey TC Huey RD1 score02 1 6 RD1 score02 2 5 RD1 score02 3 8 RD1 seed03 RD1 team03 flagicon USA S Bass br flagicon USA C Klingemann RD1 score03 1 6 RD1 score03 2 6 RD1 score03 3 RD1 seed04 WC RD1 team04 flagicon USA V Chappidi br flagicon ROU A Iordachescu RD1 score04 1 2 RD1 score04 2 1 RD1 score04 3 RD1 seed05 3 RD1 team05 flagicon IND Harsh Mankad H Mankad br flagicon USA Kaes Van t Hof K Van t Hof RD1 score05 1 6 RD1 score05 2 6 RD1 score05 3 RD1 seed06 ... 2009 5069 qd.pdf Qualifying Draw Category 2009 ATP Challenger Tour All Star Children s Foundation Sarasota Open Doubles Category Sarasota Open 2009 Doubles it All Star Children s Foundation Sarasota Open 2009 Doppio ... more details
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