- Pseudomonadaceae
Taxobox color lightgrey name Pseudomonadaceae image Pseudomonas aeruginosa 01.jpg image width 200px image caption P. aeruginosa colonies on an agar plate . regnum Bacterium Bacteria phylum Proteobacteria classis Gammaproteobacteria ordo Pseudomonadales familia Pseudomonadaceae familia authority Winslow et al., 1917 subdivision ranks Genera subdivision Azomonas BR Azomonotrichon br Azorhizophilus br Azotobacter BR Cellvibrio BR Mesophilobacter BR Pseudomonas BR Rhizobacter BR Rugamonas BR Serpens genus Serpens BR The Pseudomonadaceae is a Family biology family of bacterium bacteria that includes the genera Azomonas , Azomonotrichon , Azorhizophilus , Azotobacter , Cellvibrio , Mesophilobacter , Pseudomonas the type genus , Rhizobacter , Rugamonas , and Serpens . ref Skerman, McGowan and Sneath editors Approved Lists of Bacterial Names. Int. J. Syst. Bacteriol., 1980, 30, 225 420. ref ref name Cornelis cite book author Cornelis P editor . title Pseudomonas Genomics and Molecular Biology edition 1st publisher Caister Academic Press year 2008 url http www.horizonpress.com pseudo id http www.horizonpress.com pseudo isbn 1904455190 ref The Azotobacteriaceae were recently published as belonging in this family as well. ref name Rediers 2004 cite journal author Rediers H, Vanderleyden J, De Mot R title Azotobacter vinelandii a Pseudomonas in disguise? journal Microbiology volume 150 issue Pt 5 pages 1117 9 year 2004 pmid 15133068 doi 10.1099 mic.0.27096 0 ref History Pseudomonad literally means false unit , being derived from the Ancient Greek Greek pseudo false and monas a single unit . The term monad was used in the early history of microbiology to denote single celled organisms. Because of their widespread occurrence in nature, the pseudomonads were observed early ... Pseudomonad cia de Pseudomonadaceae es Pseudomonadaceae fr Pseudomonade mk sk Pseudomonadaceae tr Pseudomonadaceae uk Pseudomonadaceae ... more details
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- Azotobacteraceae
Taxobox color lightgrey name Pseudomonadaceae regnum Bacterium Bacteria phylum Proteobacteria classis Gammaproteobacteria ordo Pseudomonadales familia Azotobacteraceae familia authority Pribram, 1933 subdivision ranks Genera subdivision Azomonas BR Azotobacter BR The family Azotobacteraceae contains aerobic diazotrophs with two Genera, Azomonas and Azotobacter , distinguished by the ability to form cysts . The family is also characterized by variable cell shape, the classic shape being ovoid while many are pleomorphic. With an adequate supply of Mo the Azotobacteraceae are able to fix at least 10 mg of molecular nitrogen per gram of carbohydrate consumed under aerobic conditions. Like most Pseudomonadacea, the Azotobacteraceae are able to utilize a wide variety of carbon sources, including sucrose ref Tchan Y. Azotobacter. Tchan Y, and New P. Azomonas. Krieg NR, Holt JG eds. Bergey s Manual of Systematic Bacteriology, Volume 1. 1984. Williams and Wilkins. Baltimore, MD 219 234 ref . Recent analysis of the unannotated genome of Azotobacter vinelandii has shown that this bacterium is most appropriately grouped in the family Pseudomonadaceae . The original familial distinction was based on the ability to fix nitrogen, but a few Pseudomonadaceae have been found to fix nitrogen as well ref Rediers H, Vanderleyden J, De Mot R. 2004. Azotobacter vinelandii a Pseudomonas in disguise? Microbiology. 150Pt 5 1117 9. ref . The relation is not surprising given the ability of many Azotobacteraceae to fluoresce due to the production of Pyoverdine , a nonribosomal peptide nonribosomal peptide siderophore typical of many Pseudomonadaceae ref Meyer JM. 2000. Pyoverdines pigments, siderophores and potential taxonomic markers of fluorescent Pseudomonas species. Arch Microbiol. 174 3 135 42. ref ref Schwarzer D, Finking R, Marahiel MA. 2003. Nonribosomal peptides from genes to products. Nat Prod Rep. 20 3 275 87. ref References references Category Pseudomonadales Proteobacteria stub ... more details
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- Cellvibrio japonicus
italic title Taxobox color lightgrey name Cellvibrio japonicus regnum Bacterium Bacteria phylum Proteobacteria classis Proteobacteria Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Cellvibrio binomial Cellvibrio japonicus binomial authority Humphry et al. 2003 synonyms Pseudomonas fluorescens subsp. cellulosa Cellvibrio japonicus is a Gram negative soil bacterium . Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas rpsL leader
Infobox rfam Name Pseudomonas rpsL leader image Pseudomonas rpsL leader.png width caption Conserved secondary structure of rpsL leader showing the fraction of canonical base pairs Symbol rpsL psuedo AltSymbols Rfam RF01773 RNA type Gene cis reg Tax domain Pseudomonadaceae DISPLAYTITLE Pseudomonas rpsL leader The Pseudomonas rpsL leader is a putative attenuator RNA element identified by bioinformatics searches within bacteria of the Pseudomonadaceae phylum. ref name Nav10 cite journal last Naville first M coauthors Gautheret, D title Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation. journal Genome Biology date 2010 volume 11 issue 9 pages R97 pmid 20920266 accessdate 21 July 2011 doi 10.1186 gb 2010 11 9 r97 pmc 2965389 ref It is located upstream of the operon encoding ribosomal protein s S12 and S7 rpsL and rpsG genes respectively , and presents a Intrinsic termination Rho independent terminator at the 3 end. This RNA is presumed to operate as a non coding ribosomal protein leader potentially interacting with the S12 or S7 proteins, which are encoded by the operon . The motif might be related to other rpsL leaders, such as the Rickettsia rpsL leader . ref name Nav10 References reflist 1 External links Rfam id RF01773 name Psuedomonas rpsL leader Category Cis regulatory RNA elements ... more details
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- Pseudomonas rubescens
italic title Taxobox name Pseudomonas rubescens color lightgrey image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. rubescens binomial Pseudomonas rubescens binomial authority Pivnick 1955 Pseudomonas rubescens is a Gram negative soil bacterium that was originally isolated from the oil in a machine shop ref cite journal author Pivnick, H title PSEUDOMONAS RUBESCENS, A NEW SPECIES FROM SOLUBLE OIL EMULSIONS journal J Bacteriol volume 70 issue 1 pages 1 6 year 1955 Jul pmid 13242518 pmc 357624 ref . The type strain is ATCC 12099. References Reflist Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas coenobios
italic title Taxobox color lightgrey name Pseudomonas coenobios image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. coenobios binomial Pseudomonas coenobios binomial authority ZoBell and Upham 1944 Pseudomonas coenobios is a Gram negative , sporulation non sporulating , motile , rod marine bacterium ref cite journal author ZoBell, CE, and Upham, HC title A list of marine bacteria including descriptions of sixty new species journal Bull Scripps Inst Oceanogr volume 5 pages 239 292 year 1944 ref . The type strain is American Type Culture Collection ATCC 14402. References Reflist Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas perolens
italic title Taxobox color lightgrey name Pseudomonas perolens image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. perolens binomial Pseudomonas perolens binomial authority Pseudomonas perolens is a Gram negative , sporulation non sporulating , motile , rod bacterium that is known to cause mustiness in egg food eggs in Poland ref cite journal author Szybalski W title A comparative study of bacteria causing mustiness in eggs journal Nature volume 165 pages 733 734 year 1950 pmid 15416820 doi 10.1038 165733a0 issue 4201 ref . The type strain is ATCC 10757. References Reflist Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas suis
italic title Taxobox name Pseudomonas suis color lightgrey image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. suis binomial Pseudomonas suis binomial authority Woods 1930 Pseudomonas suis is a Gram negative bacterium that causes croupous pneumonia of swine genus Sus from which it derives its name. It was first isolated in the Philippines ref cite journal author Woods, GM title A taxonomic study of Pseudomonas suis isolated from croupous pneumonia in swine journal Philippine Journal of Science volume 41 issue 2 pages 181 214 year 1930 ref . The type strain is ATCC 11729. References Reflist Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas septica
italic title Taxobox name Pseudomonas septica color lightgrey image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. septica binomial Pseudomonas septica binomial authority David Hendricks Bergey Bergey , et al. 1930 Pseudomonas septica is a Gram negative , rod shaped, sporulation non spore forming , bacterium that is pathogenic to insect s. It was first isolated on the weevil Xyloterus lineatus. The type strain is ATCC 14545. Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas turbinellae
italic title Taxobox name Pseudomonas turbinellae color lightgrey image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. turbinellae binomial Pseudomonas turbinellae binomial authority Sreenivasan 1956 Pseudomonas turbinellae is a Gram negative bacterium that causes bacterial leaf spot . It was first isolated on Cleome monophylla ref cite journal title A New Bacterial Leaf Spot on Cleome monophylla journal Curr Sci volume 25 pages 92 93 year 1956 unused data Abhyankar, et al. ref . The type strain is ATCC 12446. References Reflist Proteobacteria stub Category Pseudomonadales Category Plant pathogens and diseases ... more details
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- Pseudomonas gelidicola
italic title Taxobox color lightgrey name Pseudomonas gelidicola image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. gelidicola binomial Pseudomonas gelidicola binomial authority Kadota 1951 Pseudomonas gelidicola is a Gram negative marine bacteria . ref cite journal author Kadota, H title Studies on the biochemical activities of marine bacteria. I. On the agar decomposing bacteria in the sea journal Memoirs of the College of Science, Kyoto University volume 59 pages 54 67 year 1951 ref The type strain is IAM 1127. References Reflist Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas papaveris
italic title Taxobox name Pseudomonas papaveris color lightgrey image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. papaveris binomial Pseudomonas papaveris binomial authority Lelliott and Wallace 1955 Pseudomonas papaveris is a Gram negative bacterium that was first isolated on Shirley Poppy Shirley poppies Papaver rhoeas Fact date May 2007 , from which it derives its name. The type strain is ATCC 13041. P. papaveris may be the same organism as Pseudomonas cichorii Fact date May 2007 . Proteobacteria stub Category Pseudomonadales Category Plant pathogens and diseases ... more details
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- Pseudomonas tuticorinensis
italic title Taxobox name Pseudomonas tuticorinensis color lightgrey image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. tuticorinensis binomial Pseudomonas tuticorinensis binomial authority Sreenivasan 1956 Pseudomonas tuticorinensis is a Gram negative , ocean marine denitrification denitrifying bacterium ref cite journal unused data Sreenivasan, A, and Venkataraman, R title Pseudomonas tuticorinensis n. sp., A Marine Denitrifying Bacterium journal Indian Academy of Sciences volume 25 pages 294 295 year 1956 ref . The type strain is ATCC 12230. References Reflist Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas cruciviae
italic title Taxobox name Pseudomonas cruciviae color lightgrey image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. cruciviae binomial Pseudomonas cruciviae binomial authority P. H. H. Gray Gray and H. G. Thornton Thornton Pseudomonas cruciviae is a Gram negative , rod bacterium . It may be reclassified as Comamonas testosteroni Fact date April 2007 . The type strain is IFO 12047. References references Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas excibis
italic title Taxobox name Pseudomonas excibis color lightgrey image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. excibis binomial Pseudomonas excibis binomial authority Steinhaus Pseudomonas excibis is a Gram negative , rod bacterium first isolated from the gastric caeca of the cactus bug Chelinidea vittiger Fact date May 2007 . The type strain is American Type Culture Collection ATCC 12293. Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas rathonis
italic title Taxobox name Pseudomonas rathonis color lightgrey image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. rathonis binomial Pseudomonas rathonis binomial authority Pseudomonas rathonis is a Gram negative bacterium originally isolated from the rhizosphere of agriculture agriculturally important crops ref cite journal author Egamberdiyeva D title Characterization of Pseudomonas species isolated from the rhizosphere of plants grown in serozem soil, semi arid region of Uzbekistan journal ScientificWorldJournal volume 5 pages 501 9 year 2005 Jul 8 pmid 16075145 doi 10.1100 tsw.2005.64 ref . References Reflist Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas alkanolytica
italic title Taxobox name Pseudomonas alkanolytica color lightgrey image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. alkanolytica binomial Pseudomonas alkanolytica binomial authority Nakao and Kuno 1972 Pseudomonas alkanolytica is a Gram negative soil bacterium that produces Coenzyme A . Because this organism is patented ref Nakao Y, Kuno M. Method for the production of 5 nucleotides. US Patent 3,652,395 Mar 28 1972 ref , it is not officially recognized as a legitimate Pseudomonas species, and therefore has no type strain. However, it is available through the American Type Culture Collection http www.atcc.org common catalog numSearch numResults.cfm?atccNum 21034 . References Reflist Category Pseudomonadales Proteobacteria stub ... more details
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- Cellvibrio
italic title Taxobox color lightgrey name Cellvibrio regnum Bacterium Bacteria phylum Proteobacteria classis Proteobacteria Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Cellvibrio genus authority ex Winogradsky 1929 br Blackall et al. 1986 type species Cellvibrio mixtus subdivision ranks Species subdivision Cellvibrio fibrivorans C. fibrivorans br Cellvibrio fulvus C. fulvus br Cellvibrio gandavensis C. gandavensis br Cellvibrio japonicus C. japonicus br Cellvibrio mixtus C. mixtus br Cellvibrio ostraviensis C. ostraviensis br Cellvibrio vulgaris C. vulgaris Cellvibrio is a genus of gamma proteobacteria . Category Pseudomonadales Proteobacteria stub ... more details
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- Rne-II RNA motif
Infobox rfam Name rne II RNA image rne II RNA.svg width 290 caption Consensus secondary structure of rne II RNAs Symbol rne II RNA AltSymbols Rfam RF01756 miRBase miRBase family RNA type Cis regulatory element Tax domain Pseudomonadaceae GO SO CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData The rne II RNA motif is a conserved RNA structure identified using bioinformatics . ref name Weinberg2010 cite journal author Weinberg Z, Wang JX, Bogue J, et al. title Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea and their metagenomes journal Genome Biol volume 11 issue 3 pages R31 year 2010 month March pmid 20230605 doi 10.1186 gb 2010 11 3 r31 url pmc 2864571 ref It is detected only in species classified within the family biology family Pseudomonadaceae , a group of gammaproteobacteria . rne II RNAs are consistently located in the presumed 5 untranslated region s 5 UTRs of gene s that encode Ribonuclease E RNase E . The RNase E 5 UTR element is a previously identified RNA structure that is also found in the 5 UTRs of RNase E genes. However, the latter motif is found only in enterobacteria , and the two motifs have apparently unrelated structure. In view of their differences, it was hypothesized that rne II RNAs fulfill the same functional role as RNase E 5 UTR elements, which is to regulate the levels of RNase E protein s by acting as a substrate for RNase E. Thus, when concentrations of RNase E are high, they will degrade their own messenger RNA . References references External links Rfam id RF01756 name rne II RNA Category Cis regulatory RNA elements molecular cell biology stub ... more details
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- Gammaproteobacteria
1 Saccharophagus , Reinekea 2 clade 1 Oceanospirillaceae 2 clade 1 Marinobacter 2 Pseudomonadaceae ... more details
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- Pseudomonas fuscovaginae
italic title Taxobox color lightgrey name Pseudomonas fuscovaginae image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. fuscovaginae binomial Pseudomonas fuscovaginae binomial authority ex Tanii, et al. 1976 br Miyajima, et al. 1983 synonyms Pseudomonas fuscovaginae small Tanii, et al. 1976 small Pseudomonas fuscovaginae is a fluorescent , Gram negative soil bacterium that is pathogenic to rice , causing brown sheath rot ref cite journal author Batoko et al. title Susceptibility to brown sheath rot of rice correlated to sensitivity to bacterial toxin journal Rice Genetics Newsletter volume 11 pages 102 103 year 1994 ref . The type strain is CCUG 32780. References Reflist Proteobacteria stub Category Pseudomonadales Category Plant pathogens and diseases ... more details
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- Pseudomonas delhiensis
italic title Taxobox color lightgrey name Pseudomonas dehliensis image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. dehliensis binomial Pseudomonas dehliensis binomial authority Prakash, et al. 2007 Pseudomonas delhiensis is a Gram negative bacterium isolated from the dumping site of fly ash of a power plant in Delhi , India ref cite journal author Prakash, et al. title Pseudomonas delhiensis sp. nov., from a fly ash dumping site of a thermal power plant journal Int J Syst Evol Microbiol volume 57 Pt 3 pages 527 31 year 2007 Mar pmid 17329778 last2 Kumari first2 K last3 Lal first3 R issue Pt 3 doi 10.1099 ijs.0.64456 0 ref . The type strain is MTCC 7601. References Reflist Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas pachastrellae
italic title Taxobox color lightgrey name Pseudomonas pachastrellae image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. pachastrellae binomial Pseudomonas pachastrellae binomial authority Romanenko, et al. 2005 Pseudomonas pachastrellae is a Gram negative bacterium found in deep sea sponge s ref cite journal author Romanenko, et al. title Pseudomonas pachastrellae sp. nov., isolated from a marine sponge series 55 journal Int J Syst Evol Microbiol volume Pt 2 pages 919 24 year 2005 Mar pmid 15774686 last2 Uchino first2 M last3 Falsen first3 E last4 Frolova first4 GM last5 Zhukova first5 NV last6 Mikhailov first6 VV issue Pt 2 doi 10.1099 ijs.0.63176 0 ref . The type strain is JCM 12285. References Reflist Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas psychrotolerans
italic title Taxobox name Pseudomonas psychrotolerans color lightgrey image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. psychrotolerans binomial Pseudomonas psychrotolerans binomial authority Hauser, et al. 2004 Pseudomonas psychrotolerans is a yellow pigmented, Gram negative , rod shaped, sporulation non spore forming bacterium found in small Europe an ungulate s ref cite journal author Hauser, et al. title Pseudomonas psychrotolerans sp. nov. journal Int J Syst Evol Microbiol volume 54 Pt 5 pages 1633 7 year 2004 Sep pmid 15388721 last2 K mpfer first2 P last3 Busse first3 HJ issue Pt 5 doi 10.1099 ijs.0.03024 0 ref . The type strain is LMG 21977. References Reflist Category Pseudomonadales Proteobacteria stub ... more details
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- Pseudomonas thermotolerans
italic title Taxobox name Pseudomonas thermotolerans color lightgrey image image width 240px image caption regnum Bacterium Bacteria phylum Proteobacteria classis Gamma Proteobacteria ordo Pseudomonadales familia Pseudomonadaceae genus Pseudomonas species P. thermotolerans binomial Pseudomonas thermotolerans binomial authority Manaia and Moore 2002 Pseudomonas thermotolerans is a Gram negative , aerobic organism aerobic , rod shaped bacterium found in the industrial cooking water of a Cork material cork processing plant. It is capable of surviving at 47 C 117 F ref cite journal author Manaia CM and Moore, ER title Pseudomonas thermotolerans sp. nov., a thermotolerant species of the genus Pseudomonas sensu stricto journal Int J Syst Evol Microbiol volume 52 Pt 6 pages 2203 9 year 2002 Nov pmid 12508889 issue Pt 6 ref , hence its name. The type strain is DSM 14292. References Reflist Category Pseudomonadales Proteobacteria stub ... more details
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