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Recombination (chemistry)
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Encyclopedia results for Recombination (chemistry)

Recombination (chemistry)





Encyclopedia results for Recombination (chemistry)

  1. Recombination

    wiktionary recombination Recombination may refer to Genetic recombination , the process by which genetic material is broken and joined to other genetic material Recombination physics , in semiconductors, the elimination of mobile charge carriers electrons and holes Crossover genetic algorithm , also called recombination Plasma recombination , the formation of neutral atoms from the capture of free electrons by the cations in a plasma Recombination cosmology , the time at which protons and electrons formed neutral hydrogen in the timeline of the Big Bang Recombination chemistry , the opposite of dissociation, or disambig ar ca Recombinaci cs Rekombinace fr Recombinaison he hu Rekombin ci egy rtelm s t lap ja pl Rekombinacja ru sr sv Rekombination zh ...   more details



  1. Dissociative recombination

    Unreferenced stub auto yes date December 2009 Dissociative recombination is a process where a positive molecular ion recombines with an electron, and as a result, the neutral molecule dissociates. This reaction is important for extraterrestrial and atmospheric chemistry. On Earth , dissociative recombination is practically non existent, as free electrons would react with any molecule even neutral molecules they encounter. Even in the best laboratory conditions, dissociative recombination is hard to observe. In astrophysics , dissociative recombination is one of the main paths via which molecules are broken down, and other molecules are formed. The existence of dissociative recombination is possible due to the vacuum of the interstellar medium . A typical example of dissociative recombination in astrophysics is math CH 3 e rightarrow CH 2 H math See also Ionization DEFAULTSORT Dissociative Recombination Category Astrophysics Chem stub Astronomy stub fr Recombinaison dissociative nl Dissociatieve recombinatie ...   more details



  1. Homologous recombination

    Image HR in meiosis.svg thumb 275px alt Depiction of chromosome 1 after undergoing homologous recombination in meiosis Figure 1. During meiosis , homologous recombination can produce new combinations of genes ... 1 human chromosome 1 . Homologous recombination is a type of genetic recombination in which nucleotide ... as double strand breaks. Homologous recombination also produces new combinations of DNA sequences ... location New York year 2002 page 845 chapter Chapter 5 DNA Replication, Repair, and Recombination chapterurl ... 48122761 57023651 69932405 ref Homologous recombination is also used in horizontal gene transfer ... homologous recombination varies widely among different organisms and cell types, most forms involve ... molecules. Depending on how the two junctions are cut by enzyme s, the type of homologous recombination that occurs in meiosis results in either chromosomal crossover or non crossover. Homologous recombination ... the damaged DNA molecule as it existed before the double strand break. Homologous recombination ... recombination in protist s a diverse group of eukaryotic microorganisms has been interpreted ... homologous recombination are topics of active research. Homologous recombination is also ... recombination, and gene mapping last1 Lobo first1 I last2 Shaw first2 K journal Nature Education volume 1 issue 1 year 2008 url http www.nature.com scitable topicpage thomas hunt morgan genetic recombination ... later called recombination could also occur in somatic cell s like white blood cell s and skin cell ... of genetic recombination, which is more similar to sexual reproduction. This work established E. coli ... 2010 ref Building on studies in Fungus fungi , in 1964 Robin Holliday proposed a model for recombination ... a double strand chromosome break by homologous recombination revisiting Robin Holliday s model ... a model now known as the Homologous recombination DSBR pathway DSBR pathway , which accounted for observations ... 0092 8674 83 90331 8 title The double strand break repair model for recombination journal Cell volume ...   more details



  1. Plasma recombination

    Unreferenced date October 2008 Plasma recombination is a process by which ion s of a Plasma physics plasma capture the free energetic electron s to form new neutral atom s. Recombination usually take place in the whole volume of a plasma volume recombination , although in some cases it is confined to some special region of it. Each kind of reaction is called a recombining mode and their individual rates are strongly affected by the properties of the plasma such as its energy heat , density of each species, pressure and temperature of the surrounding environment. Especially volume recombination is a very unlikely process at pressures below 1× 10 sup 4 sup   Pa because of the conservation of energy and momentum. A third body is needed to satisfy the conservation laws. If the volume of the plasma is confined by a body the walls play the role of the third body. So recombination mostly occurs at the walls. Hydrogen recombination modes are of vital importance in the development of divertor regions for tokamak reactors. In fact they will provide a good way for extracting the energy produced in the core of the plasma. At the present time, it is believed that the most likely plasma losses observed in the recombining region are due to two different modes electron ion recombination EIR and molecular activated recombination MAR . physics stub Category Plasma physics Recombination, plasma ...   more details



  1. Ectopic recombination

    Orphan date April 2012 Ectopic recombination is the Genetic recombination recombination between sequences like Leucine leu2 sequences present at different genomic locations. ref Meiotic Gene conversion Gene Conversion and Crossing Over Between Dispersed Homologous Sequences Occurs Frequently in Saccharomyces cerevisiae . Genetics 115 233 246 February, 1987 .Michael Lichten, Rhona H. Borts and James E. Haber ref Reference reflist Category Cellular processes Category Molecular genetics genetics stub ...   more details



  1. Genetic recombination

    Genetic recombination is a process by which a molecule of nucleic acid usually DNA , but can also be RNA is broken and then joined to a different one. Recombination can occur between Homology biology similar molecules of DNA, as in homologous recombination , or dissimilar molecules, as in non homologous end joining . Recombination is a common method of DNA repair in both bacteria and eukaryotes . In eukaryotes, recombination also occurs in meiosis , where it facilitates chromosomal crossover . The crossover ... immune system , a type of genetic recombination called V D J recombination helps immune cells ... recombination is thought to have many advantages, as it is a major engine of genetic variation ... manner. In genetic engineering , recombination can also refer to artificial and deliberate recombination of disparate pieces of DNA, often from different organisms, creating what is called recombinant DNA . A prime example of such a use of genetic recombination is gene targeting , which ... on genetic recombination are also applied in protein engineering to develop new proteins of biological interest. Genetic recombination is catalysis catalyzed by many different enzyme s, called recombinase ... recombination, whereas the DMC1 gene DMC1 protein is specific to meiotic recombination. Chromosomal ... of crossing over 1916 Chromosomal crossover refers to recombination between the paired chromosome ... 8153 3218 3 ref Because recombination can occur with small probability at any location along chromosome, the recombination frequency frequency of recombination between two locations depends on their distance ... recombination are said to be linked. One gene in a linked pair can sometimes be used as a marker to deduce ... causing gene. ref Cite web title Access Excellence work Crossing over Genetic Recombination publisher ... often been recorded in fungal crosses. ref Stacey, K. A. 1994. Recombination. In Kendrew John, Lawrence ... Nonhomologous recombination main Non homologous end joining Recombination can occur between DNA sequences ...   more details



  1. Recombination hotspot

    Recombination hotspots are regions in a genome that exhibit elevated rates of recombination, relative to a neutral expectation. The peak recombination rate within hotspots can be hundreds or thousands of times that of the surrounding region. ref Jeffreys, A.J., Kauppi, L., & Neumann, R., Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. , Nature Genetics 29, 217 222 2001 ref The PRDM9 protein is suspected to be a cause of hotspots in mammals. All hotspots so far characterized share similar morphology and are approximately 1.5 to 2.0 base pair Length measurements kb in width, which suggests a common causal process. Furthermore, recent studies have used patterns in linkage disequilibrium to identify over 25,000 hotspots in the human genome , ref Myers S., Bottolo L., Freeman C., McVean G. and Donnelly P., A Fine Scale Map of Recombination Rates and Hotspots Across the Human Genome , Science, Vol. 310. no. 5746, pp. 321 324 2005 ref suggesting that hotspots are a ubiquitous feature of the genome. See also Evolution Further reading http www.ox.ac.uk media news stories 2005 050211.html Researchers find surprising difference between human and chimp genomes Despite 99 DNA similarity between humans and our nearest relative, chimpanzees, the locations of DNA swapping between chromosomes, known as recombination hotspots, are almost entirely different. The surprising finding is reported in a paper published in 2005 in Science by Oxford University statisticians and US and Dutch geneticists. http biology.plosjournals.org perlserv?request get document&doi 10.1371 journal.pbio.0020190 What s so hot about recombination hotspots? A primer on recombination hotspots by Jody Hey in PLoS Biology References Reflist Category Molecular genetics Genetics stub de Hotspot Genetik ...   more details



  1. Recombination (cosmology)

    Physical cosmology In cosmology , recombination refers to the epoch astronomy epoch at which charged ... hydrogen atom s. ref group nb Note that the term recombination is a misnomer, considering that it represents ... in the universe, which leads to recombination sometimes being called photon decoupling , although recombination ... observe today as cosmic microwave background radiation . Recombination occurred when the universe was roughly 300,000 years old, or at a redshift of z     val 1100 . Derivation of recombination epoch It is possible to find a rough estimate of the redshift of the recombination epoch, starting by considering that during the era preceding recombination, the photons were primarily coupled to matter ... . math ref Ryden 2003 , p. 158. ref Solving this equation for a 50 percent ionization yields a recombination ... or 0.3  eV. ref Longair 2006 , p. 279. ref A different statement of this is that recombination ... relied on the assumptions of thermodynamic equilibrium and recombination directly to the ground state of hydrogen, each of which simplifies the calculation but also modifies the result. Recombination to an excited state of hydrogen means that recombination proceeds more slowly than that predicted ... of recombination yields a value closer to z     val 1100 . ref Galli et al. 2008 , p.1. ref Impact Prior to recombination, photons were not able to freely travel through the universe ... causes a loss of information, and there is therefore a photon barrier at a redshift near that of recombination .... ref Longair 2006 , p. 280. ref Once recombination had occurred, however, the mean free path of photons greatly increased due to the lower number of free electrons. Shortly after recombination, the photon ..., recombination is closely associated with the last scattering surface, which is the name for the last ... for the baryon to photon ratio and matter density, recombination and photon decoupling need not have ... cite journal author Galli, S. Bean, R. Melchiorri, A. Silk, J. title Delayed recombination and cosmic ...   more details



  1. Chemistry

    Other uses pp semi protected small yes Image Chemicals in flasks.jpg thumb right Chemistry is the science ... reactions. science Chemistry is the science of matter , especially its chemical reaction s, but also ... what is chemistry.htm title What is Chemistry? publisher Chemweb.ucc.ie date accessdate 2011 06 12 ref ref http dictionary.reference.com browse Chemistry Chemistry . n.d. . Merriam Webster s Medical Dictionary. Retrieved August 19, 2007. ref Chemistry is concerned with atoms and their interactions with other atoms, and particularly with the properties of chemical bond s. Chemistry is sometimes called ... . ref Theodore L. Brown, H. Eugene Lemay, Bruce Edward Bursten, H. Lemay. Chemistry The Central Science . Prentice Hall 8 edition 1999 . ISBN 0 13 010310 1. Pages 3 4. ref ref Chemistry is seen ... . Wiley VCH, 2001. ISBN 3 527 30271 9. Pages 1 2. ref Chemistry is a branch of physical science but Difference between chemistry and physics distinct from physics . ref http www.springerlink.com content k97523j471763374 Is chemistry a branch of physics? a paper by Mario Bunge ref The etymology of the word chemistry has been much disputed. ref See Chemistry etymology for possible origins of this word. ref The genesis of chemistry can be traced to certain practices, known as alchemy , which had ... Laboratory , Institute of Biochemistry, University of Cologne . Traditional chemistry starts with the study ... , reactions and transformations that are studied in chemistry are a result of interaction either between different chemical substances or between matter and energy . Such behaviors are studied in a chemistry ... of chemistry See also Alchemy Timeline of chemistry Nobel Prize in Chemistry Ancient Egypt ians pioneered the art of synthetic wet chemistry up to 4,000 years ago. ref http www.newscientist.com article ... BC ancient civilizations were using technologies that formed the basis of the various branches of chemistry ... adopted by Epicurus 341 270 BCE . The genesis of chemistry can be traced to the widely observed phenomenon ...   more details



  1. FLP-FRT recombination

    see also Recombinase mediated cassette exchange In genetics , FLP FRT recombination is a site specific recombination site directed recombination technology used to manipulate an organism s DNA under controlled conditions in vivo . It is analogous to Cre Lox recombination . It involves the recombination of sequences between short Flippase Recognition Target FRT sites by the Flippase recombination enzyme FLP or Flp derived from the 2 m plasmid of the baker s yeast Saccharomyces cerevisiae . The 34bp long FRT site sequence is 5 GAAGTTCCTATTCtctagaaaGTATAGGAACTTC 3 . Flippase flp binds to the 13 bp 5 GAAGTTCCTATTC 3 and to the reverse complement of 5 GTATAGGAACTTC 3 5 GAAGTTCCTATAC 3 . The FRT site is cleaved just before 5 tctagaaa 3 , the 8bp asymmetric core region , on the top strand and behind this sequence on the bottom strand. ref cite journal author Zhu XD, Sadowski PD title Cleavage dependent Ligation by the FLP Recombinase journal Journal of Biological Chemistry volume 270 pages 23044 54 year 1995 pmid 7559444 issue 39 doi 10.1074 jbc.270.39.23044 ref Several variant FRT sites exist. Recombination can occur between two identical FRT sites but generally not between non identical FRT sites ref cite journal author Schlake T, Bode J title Use of mutated FLP recognition target FRT sites for the exchange of expression cassettes at defined chromosomal loci journal Biochemistry volume 33 issue 43 pages 12746 12751 year 1994 pmid 7947678 doi 10.1021 bi00209a003 ref Many available constructs include the sequence 5 GAAGTTCCTATTCC 3 immediately upstream the FRT site resulting in 5 GAAGTTCCTATTCCGAAGTTCCTATTCtctagaaaGTATAGGAACTTC 3 but this sequence is dispensable for recombination. Because the recombination activity can be targeted to only one target organ, or a low level of recombination activity can be used to consistently alter the DNA of only a subset of cells, FLP FRT can ... can also be studied over time, by using an inducible promoter to trigger the recombination activity ...   more details



  1. Site-specific recombination

    recombination , also known as conservative site specific recombination , is a type of genetic recombination ... specific recombination systems just a recombinase recombinase enzyme and the recombination sites ... sites are also needed. Site specific recombination systems are highly specific, fast and efficient ... genomes journal Biological Chemistry volume 381 issue 9 10 pages 801 13 doi 10.1515 BC.2000.103 ... in Genetics isbn 978 0 12 017655 7 ref Recombination sites are typically between 30 and 200 nucleotide ... binds, and which flank a central crossover sequence at which the recombination takes place. The pairs of sites between which the recombination occurs are usually identical, but there are exceptions ... Recombination journal Annual Reviews in Biochemistry volume 58 issue 1 pages 913 41 doi 10.1146 annurev.bi.58.070189.004405 pmid 2528323 ref Mechanism Recombination between two DNA sites begins by the recognition ... energy rich Cofactor biochemistry cofactors such as adenosine triphosphate ATP . The recombination ... sites and vice versa. This causes the recombination sites to be reconstituted in the recombination ..., such as Cre recombinase Cre or FLP FRT Recombination FLP , cleave one DNA strand at a time at points ... view of tyrosine recombinase site specific recombination pages 93 117 publisher ASM Press ref ... mediated site specific recombination in vitro DNA cleavage and protein DNA linkage at the recombination ... Resolvase mediated recombination intermediates contain a serine residue covalently linked to DNA journal ... . ref name Stark1989 cite journal last1 Stark first1 M.W. year 1989 title Site specific recombination ... and inversions occur if the recombination takes place between two sites that are found on the same molecule intramolecular recombination , and if the sites are in the same direct repeat or in an opposite orientation inverted repeat , respectively. Insertions on the other hand take place if the recombination occurs on sites that are situated on two different DNA molecules intermolecular recombination ...   more details



  1. Recombination detection program

    Orphan date April 2012 refimprove date February 2011 Recombination detection program RDP is a computer program used to analyse nucleotide sequence data and identify evidence of genetic recombination. Besides applying a large number of different recombination detection methods it also implements various phylogenetic tree construction methods and recombination hotspot tests. See also Computational phylogenetics External links http darwin.uvigo.es rdp rdp.html Homepage for the program Categories DEFAULTSORT Recombination Detection Program Category Molecular biology Category Science software biology stub genetics stub science software stub ...   more details



  1. Recombination signal sequences

    Unreferenced date January 2009 The regional genes V, D, J , used to generate T cell receptor T cell receptors and Antibody Immunoglobulin molecules , are flanked by Recombination Signal Sequences RSSs that are recognized by a group of enzymes known collectively as the VDJ recombinase. RSSs are composed of seven conserved nucleotides a heptamer that reside next to the gene encoding sequence followed by a spacer containing either 12 or 23 unconserved nucleotides followed by a conserved nonamer 9 base pairs . The RSSs are present on the Directionality molecular biology 3 side downstream of a V region and the Directionality molecular biology 5 side upstream of the J region. These are the sides that will be involved in the joining. Only a pair of dissimilar spacer RSSs are efficiently genetic recombination recombined i.e. one with a spacer of 12 nucleotides will be recombined with one that has a spacer containing 23 nucleotides . This is known as the 12 23 rule of recombination or the one turn two turn rule . See also VDJ recombination Category Immune system immunology stub ...   more details



  1. Generation?recombination noise

    Unreferenced date October 2007 Generation Recombination noise , or g r noise , is a type of electrical signal noise caused statistically by the fluctuation of the generation and Carrier generation and recombination recombination of electrons in semiconductor based photon detectors. See also Noise Noise audio residual low level hiss or hum Noise electronic related to electronic circuitry. Noise figure the ratio of the output noise power to attributable thermal noise. Signal noise in science, fluctuations in the signal being received. Thermal noise sets a fundamental lower limit to what can be measured. Weighting filter ITU R 468 noise weighting A weighting List of noise topics science stub Category Noise ...   more details



  1. Non-radiative recombination

    unreferenced date March 2010 Non radiative recombination is a process in phosphor s and semiconductor s, whereby charge carrier s carrier generation and recombination recombine without releasing photon s. A phonon is released instead. Non radiative recombination in optoelectronics and phosphors is an unwanted process, lowering the light generation efficiency and increasing heat losses. Shockley Read Hall SRH process The electron in transition between electronic band structure bands passes through a new energy state created within the band gap by an impurity in the crystal lattice . The impurity state can absorb differences in momentum between the carriers, and so this process is the dominant generation and recombination process in silicon and other indirect bandgap materials. It can also dominate in direct bandgap materials under conditions of very low charge carrier density carrier densities very low level injection . The energy is exchanged in the form of lattice vibration, or a phonon exchanging thermal energy with the material. Various impurities and dislocation s create energy level s within the band gap corresponding to neither donor nor acceptor levels, forming deep level trap s. Non radiative recombination occurs primarily at such sites. Category Charge carriers ...   more details



  1. Cre-Lox recombination

    Refimprove date March 2010 Cre Lox recombination is a site specific recombinase technology widely used ... enzyme, Cre recombinase that Site specific recombination recombines a pair of short target sequences ... lox system is very similar in action and in usage to the FLP FRT recombination system. History The Cre Lox recombination is a special type of Site specific recombinase technology site specific recombination ... specific recombination system in the yeast Saccharomyces cerevisiae , Mol Cell Biol 7 2087 2096 ref ref Sauer, B. and Henderson, N. 1988 Site specific DNA recombination in mammalian cells by the Cre ... of Dr. Jamey Marth showed that Cre Lox recombination could be used to delete loxP flanked .... ref Orban, P.C., Chui, D., and Marth, J.D. 1992 Tissue and site specific recombination in transgenic ... switch recombination at individual switch regions evidenced through Cre loxP mediated ... of Drs. Marth and Rajewsky showed in 1994 that Cre lox recombination could be used for conditional gene ... the Max Delbr ck medal to Dr. Klaus Rajewsky for his role in developing Cre Lox recombination. Cre Lox recombination involves the targeting of a specific sequence of DNA and splicing it with the help ... embryonic lethality, Cre Lox recombination is commonly used to circumvent this problem. In addition, Cre Lox recombination provides the best experimental control that presently exists in transgenic animal ... The Cre lox system is used as a genetic tool to control site specific Genetic recombination recombination events in genomic DNA. This system has allowed researchers to manipulate a variety of genetically ... catalyse the recombination of DNA between specific sites in a DNA molecule. These sites, known ... where recombination can occur. When cells that have loxP sites in their genome express Cre, a recombination .... The result of recombination depends on the orientation of the loxP sites. For two lox sites on the same ... it is possible for Chromosomal translocation translocation events to be catalysed by Cre induced recombination ...   more details



  1. Carrier generation and recombination

    In the solid state physics of semiconductor s, carrier generation and recombination are processes by which mobile charge carrier semiconductor charge carrier s electron s and electron hole s are created and eliminated. Carrier generation and recombination processes are fundamental to the operation of many optoelectronic semiconductor device s, such as photodiode s, LED s and laser diode s. They are also critical to a full analysis of p n junction devices such as bipolar junction transistor s and p n junction diode s. The electron hole pair is the fundamental unit of generation and recombination, corresponding to an electron transitioning between the valence band and the conduction band. Band structure Like other solids, semiconductor materials have electronic band structure determined by the crystal properties of the material. The actual energy distribution among the electrons is described by the Fermi energy and the temperature of the electrons. At absolute zero temperature, all of the electrons ... band, producing two mobile carriers while recombination describes processes by which a conduction ... band. In a material at thermal equilibrium generation and recombination are balanced, so that the net ... . Generation and recombination processes Carrier generation and recombination result from interaction ... and recombination File diffusion center.gif thumb 350px right The following image shows change ... differences in momentum between the carriers, and so this process is the dominant generation and recombination ... deep level trap s. Photon exchange During radiative recombination , a form of spontaneous emission ... recombination is significant only in direct bandgap materials. When photons are present in the material ... stimulate a recombination event, resulting in a generated photon with similar properties to the one ... diode s. Auger recombination The energy is given to a third carrier, which is excited to a higher ... in the unstable high energy state. The Auger recombination can be calculated from the equation ...   more details



  1. Recombination activating gene

    protein Name recombination activating gene 1 caption image width HGNCid 9831 Symbol RAG1 AltSymbols EntrezGene 5896 OMIM 179615 RefSeq NM 000448 UniProt P15918 PDB ECnumber Chromosome 11 Arm p Band 13 LocusSupplementaryData protein Name recombination activating gene 2 caption image width HGNCid 9832 Symbol RAG2 AltSymbols EntrezGene 5897 OMIM 179616 RefSeq NM 000536 UniProt P55895 PDB ECnumber Chromosome 11 Arm p Band 13 LocusSupplementaryData Pfam box Symbol RAG Name Recombination activating protein 2 image width caption Pfam PF03089 InterPro IPR004321 SMART PROSITE SCOP TCDB CDD OPM family OPM protein PDB Pfam box Symbol RAG Name Recombination activating protein 1 image width caption Pfam PF12940 InterPro IPR004321 SMART PROSITE SCOP TCDB CDD OPM family OPM protein PDB The recombination activating genes RAGs encode enzymes that play an important role in the rearrangement and recombination of the genes of immunoglobulin and T cell receptor molecules during the process of VDJ recombination . There are two recombination activating gene products known as RAG 1 and RAG 2, whose cellular ..., in a process called VDJ recombination . RAG 1 and RAG 2 are proteins at the ends of VDJ genes ... and a flanking recombination signal sequence RSS . They do this in two steps. They initially introduce ... initiate V D J recombination, which is essential for the maturation of pre B and pre T cells. Activated ... DNA so called class switch recombination AKA isotype switching and somatic hypermutation AKA ... 0 7216 0008 5 cite journal author Sadofsky MJ title Recombination activating gene proteins more regulation ... together identification and characterization of structural domains in the V D J recombination protein ... D J Recombination Signal Sequences Were Derived from Transib Transposons journal PLoS Biol. volume ... explanation of recombination activating gene for the general reader. Immune system DEFAULTSORT Recombination Activating Gene Category Immune system Category Lymphocytes es Gen activador de recombinaci n ...   more details



  1. Non allelic homologous recombination

    Non allelic homologous recombination NAHR is a form of homologous recombination that occurs between two lengths of DNA that have high sequence homology biology homology , but are not allele s. ref name Hurles ref name pmid17637735 cite journal author Beckmann JS, Estivill X, Antonarakis SE title Copy number variants and genetic traits closer to the resolution of phenotypic to genotypic variability journal Nat. Rev. Genet. volume 8 issue 8 pages 639 46 year 2007 month August pmid 17637735 doi 10.1038 nrg2149 url ref It usually occurs between sequences of DNA that have been previously Segmental duplication duplicated through evolution, and therefore have low copy repeats LCRs . When non allelic homologous recombination occurs between different LCRs, Deletion genetics deletions or further Gene duplication duplications of the DNA can occur. This can give rise to rare genetic disorder s, caused by the loss or increased copy number of genes within the deleted or duplicated region. It can also contribute to the copy number variation seen in some gene clusters. ref name pmid20333217 cite journal author Karn RC, Laukaitis CM title The mechanism of expansion and the volatility it created in three pheromone gene clusters in the mouse Mus musculus genome journal Genome Biol Evol volume 1 issue pages 494 503 year 2009 pmid 20333217 pmc 2839280 doi 10.1093 gbe evp049 url ref As LCRs are often found in hotspots in the human genome, some chromosomal regions are particularly prone to NAHR. ref name Hurles Citation last Hurles first Matthew, et al contribution Recombination Hotspots in Nonallelic Homologous Recombination title Genomic Disorders The Genomic Basis of Disease pages 341 355 publisher ... end joining and non allelic homologous recombination in atypical NF1 microdeletions journal Hum ... ref See also Genetic recombination Non homologous end joining References Reflist genetics stub DEFAULTSORT Non allelic homologous recombination Category Genetics ...   more details



  1. V(D)J recombination

    V D J recombination , also known as somatic recombination , is a mechanism of genetic recombination in the early ... system . V D J recombination takes place in the primary lymphoid tissue the bone marrow for B cells , and Thymus for T cells .V D J recombination nearly randomly combines V ariable, D iverse, and J oining ... with B lineage acute lymphoblastic leukemia implications for the mechanisms of VDJ recombination ... D J recombination of immunoglobulin heavy chains Heavy chain In the developing B cell , the first recombination event to occur is between one D and one J gene segment of the heavy chain locus. Any DNA between these two genes is deleted. This D J recombination is followed by the joining of one V gene ..., the first step of recombination for the light chains involves the joining of the V and J chains to give ... undergo essentially the same sequence of ordered recombination events as that described for immunoglobulins. D to J recombination occurs first in the chain of the TCR. This process can involve either ... of the D sub sub 2 gene segment to one of seven J sub sub 2 segments. DJ recombination is followed ... of T cell s. Mechanism Recombination signal sequences The regional genes V, D, J are flanked by Recombination Signal Sequences RSSs that are recognized by a group of enzymes known collectively ... as the 12 23 rule of recombination or one turn two turn rule . VDJ recombinase VDJ recombinase ... in many cell types. The initial steps of VDJ recombination are carried out by critical lymphocyte specific enzymes, called recombination activating gene 1 and 2 RAG1 and RAG2 . These enzymes associate ... cite journal author V.V. Kapitonov and J. Jurka year 2005 title RAG1 core and V D J recombination signal ... end joining and V D J recombination journal Cell volume 108 pages 781 794 pmid 11955432 .... This great diversity allows VDJ recombination to generate antibodies even to microbes that neither ... V D J Recombination. Series Advances in Experimental Medicine and Biology, Vol. 650 Ferrier ...   more details



  1. Meiotic recombination checkpoint

    The meiotic recombination checkpoint monitors the Meiotic recombination In eukaryotes meiotic recombination during meiosis , and blocks the entry into Metaphase I Metaphase I metaphase I if the recombination is not efficiently processed. Meitotic recombination contributes to the cells in two different ways. First, to achieve proper segregation, each pair of homologous chromosomes must be linked to each other to maintain a certain level of tension between them. Such tension is supposed to help the assembly of spindles and generally depends on meitotic recombination. Secondly, Meitotic recombination increases the genetic diversity of gametes, making them readily adapt to new environment. Overview Image Malik meiotic recombination.JPG thumb right alt See caption Spo11 catalyzes a double strand break in one of the two homologous chromosomes to induce meiotic recombination. DSB dependent meiotic recombination checkpoint monitors the repair of these DSBs while DSB independent meiotic recombination checkpoint examines the Synapsis asynapsis of each homolog pair which is the consequence of uncompleted DSB induction. Generally speaking, the cell cycle regulation of meiosis is similar to that of mitosis. As in the mitotic cycle, these transitions are regulated by combinations of gene regulatory factors, cyclin Cdk complex and the APC. ref name Morgan cite book last Morgan first D title The Cell ... break DSB and repair in prophase I. Therefore meiotic recombination checkpoint can be a kind of DNA ..., the meiotic recombination checkpoint also makes sure that meiotic recombination does happen in every ... phosphorylation and marking Wee1 to be degraded. Meiotic recombination begins with a double strand break ... as classical DNA damage response and is the part we know the best in meiotic recombination checkpoint ... of Different Recombination Defects in Mouse Spermatocytes Yields Distinct Responses despite Elimination ... responses drive the loss of oocytes in recombination defective mouse mutants first6 M last6 Jasin ...   more details



  1. Edge recombination operator

    Multiple issues expert subject June 2011 refimprove June 2011 The edge recombination operator ERO is an operator that creates a path graph theory path that is similar to a set of existing paths parents by looking at the edges rather than the vertices. The main application of this is for crossover genetic algorithm crossover in genetic algorithms when a genotype with non repeating gene sequences is needed such as for the travelling salesman problem . Algorithm ERO is based on an adjacency matrix , which lists the neighbors of each node in any parent. Image Genetic ero crossover.svg thumb right ERO crossover For example, in a travelling salesman problem such as the one depicted, the node map for the parents CABDEF and ABCEFD see illustration is generated by taking the first parent, say, ABCEFD and recording its immediate neighbors, including those that roll around the end of the string. Therefore ... A B C E F D ... ...is converted into the following adjacency matrix by taking each node in turn, and listing its connected neighbors A B D B A C C B E D F A E C F F E D With the same operation performed on the second parent CABDEF , the following is produced A C B B A D C F A D B E E D F F E C Followed by making a Union set theory union of these two lists, and ignoring any duplicates. This is as simple as taking the elements of each list and appending them to generate a list of unique link end points. In our example, generating this A B C D B,D C,B B A C D A,C A,D C A B E F B,E F,A D A B E F F,A B,E E C D F C,F D,F F C D E E,D E,C The result is another adjacency matrix , which stores ... solutions using genetic edge recombination ref References Reflist cite conference first Darrell ... salesman The genetic edge recombination operator booktitle International Conference on Genetic Algorithms ... Salesman Problem blob master edge recombination.py Edge Recombination Operator Python DEFAULTSORT Edge Recombination Operator Category Genetic algorithms ...   more details



  1. Analytical chemistry

    For the journal Analytical Chemistry journal Analytical chemistry is the study of the Separation process ..., Donald M. title Fundamentals of analytical chemistry publisher Saunders College Pub location Philadelphia ... of the identity of the chemical species in the sample and Quantitative analysis chemistry quantitative ... year 1998 pages isbn 0 03 002078 6 oclc doi accessdate ref Classical methods also known as wet chemistry methods use separations such as Precipitation chemistry precipitation , Extraction chemistry ... using chromatography or electrophoresis methods. Analytical chemistry is also focused on improvements ... better chemical information. Analytical chemistry has applications in forensics , bioanalysis , Clinical chemistry clinical analysis, environmental analysis , and List of materials analysis methods ... Bunsen right Analytical chemistry has been important since the early days of chemistry, providing ... this period significant analytical contributions to chemistry include the development of systematic ... 3i05n.pdf , Basic Education in Analytical Chemistry ref Most of the major developments in analytical chemistry take place after 1900. During this period instrumental analysis becomes progressively ... instruments. ref TrAC Trends in Analytical Chemistry Volume 21, Issues 9 10, Pages 547 557 http ... in approximately the 1970s into the present day analytical chemistry has progressively become more inclusive of biological questions bioanalytical chemistry , whereas it had previously been largely ... in chemistry as probes and even to start and influence a wide variety of reactions. The late 20th century also saw an expansion of the application of analytical chemistry from somewhat academic chemical questions to Forensic chemistry forensic , Environmental chemistry environmental , Chemical industry industrial and clinical chemistry medical questions, such as in histology . ref Talanta , Volume ... of analytical chemistry in the U.S.A. ref Modern analytical chemistry is dominated by instrumental ...   more details



  1. Chemistry (disambiguation)

    wiktionary chemistry Chemistry is the science of matter at or near the atomic scale. Chemistry may also refer to TOC right Science Chemistry etymology , the history and use of the word Chemistry A European Journal , an academic periodical AP Chemistry , a course offered in the Advanced Placement Program series Film and television Chemistry film Chemistry film , a 2009 Malayalam film Chemistry TV series Chemistry TV series , a 2011 American softcore pornographic series Chemistry drama Chemistry drama , a 2010 Pakistani television drama serial Chemistry A Volatile History , a 2010 BBC documentary Chemistry The New Batman Adventures Chemistry The New Batman Adventures , an episode of The New Batman Adventures Chemistry Smash Chemistry Smash , an episode of Smash Music Chemistry band , a Japanese popular music R&B duo Albums Chemistry Buckshot and 9th Wonder album Chemistry Buckshot and 9th Wonder album , 2005 Chemistry Girls Aloud album Chemistry Girls Aloud album , 2005 Chemistry Johnny Gill album Chemistry Johnny Gill album , 1985 Chemistry , a 1981 album by Mondo Rock Chemistry , a 1997 album by Nirvana UK band Nirvana UK band Chemistry , a 2004 album by zeebee Songs Chemistry song Chemistry song , a 2001 song by Semisonic Chemistry , a song by Alcazar from Alcazarized Chemistry , a song by Jawbreaker from Dear You Chemistry , a song by The Nolans from Portrait The Nolans album Portrait Chemistry , a song by Rush from Signals Rush album Signals Chemistry , a song by Unkle from War Stories album War Stories Other Chemistry.com , an online dating service Interpersonal chemistry or interpersonal attraction, an attraction between people that leads to friendships and romantic relationships See also Lookfrom Chemistry Intitle Chemistry Chemical disambiguation disambiguation no Kjemi andre betydninger ru ...   more details



  1. Dissociation (chemistry)

    For Dissociation disambiguation Dissociation Unreferenced date December 2009 Dissociation in chemistry and biochemistry is a general process in which ionic compounds Complex chemistry complexes , or salts separate or split into smaller particles, ions, or Radical chemistry radicals , usually in a reversible manner. For instance, when a Br nsted Lowry acid is put in water, a covalent bond between an electronegative atom and a hydrogen atom is broken by heterolytic fission , which gives a proton and a negative ion . Dissociation is the opposite of association and recombination . The process is frequently confused with ionization . Dissociation constant For reversible dissociations in a chemical equilibrium AB Eqm A B the dissociation constant K sub d sub is the ratio of dissociated to undissociated compound math K d mathrm frac A B AB math where the brackets denote the equilibrium concentrations of the species. Dissociation degree The dissociation degree is the fraction of original solute molecules that have dissociated. It is usually indicated by the Greek symbol math alpha math . There is a simple relationship between this parameter and the van t Hoff factor math i math . If the solute substance dissociates into math n math ions, then math i 1 alpha n 1 math For instance, for the following dissociation KCl Eqm K sup sup Cl sup sup As math n 2 math , we would have that math i 1 alpha math Salts The dissociation of salts by solvation in a solution like water molecule water means the separation of the anion s and cation s. The salt can be recovered by evaporation of the solvent ..., meaning that dissociation and recombination takes place at the same time. The acid dissociation ... value and a lower p K sub a sub value . Fragmentation Fragmentation chemistry Fragmentation of a molecule ... . See also Ionization Acid Base chemistry Thermal decomposition DEFAULTSORT Dissociation Chemistry Category Equilibrium chemistry Category Chemical processes ar bg ca Dissociaci ...   more details




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