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Encyclopedia results for Small nuclear RNA

Small nuclear RNA





Encyclopedia results for Small nuclear RNA

  1. Small nuclear RNA

    Small nuclear ribonucleic acid snRNA is a class of small RNA molecules that are found within the nucleus of eukaryotic cells. They are transcribed by RNA polymerase II or RNA polymerase III and are involved in a variety of important processes such as RNA splicing removal of intron s from hnRNA , regulation of transcription factors 7SK RNA or RNA polymerase II B2 RNA , and maintaining the telomere s. They are always associated with specific proteins, and the complexes are referred to as SnRNP small nuclear ribonucleoprotein s snRNP often pronounced snurps . These elements are rich in uridine content. A large group of snRNAs are known as snoRNA small nucleolar RNAs snoRNAs . These are small RNA molecules that play an essential role in RNA biogenesis and guide chemical modifications of ribosomal RNAs rRNAs and other RNA genes tRNA and snRNAs . They are located in the nucleolus and the Cajal body Cajal bodies of eukaryotic cells the major sites of RNA synthesis , where they are called Small Cajal body specific RNA scaRNA s small Cajal body specific RNAs . See also MicroRNA External links MeshName Small Nucleolar RNA MeshName Small Nuclear RNA Nucleic acids Category RNA Category Molecular genetics Category Non coding RNA genetics stub molecular cell biology stub biochem stub ar cs SnRNA de SnRNA fa gl ARN nuclear pequeno it Small nuclear RNA he SnRNA pl SnRNA pt Pequeno ARN nuclear ru sv SnRNA uk zh RNA ...   more details



  1. U7 small nuclear RNA

    Infobox rfam Name U7 small nuclear RNA image RF00066.jpg width caption Predicted secondary structure ... Small nuclear RNA snRNA Tax domain Eukaryota GO SO SO 0000274 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData The U7 small nuclear RNA U7 snRNP is an RNA molecule ... of the Drosophila U7 small nuclear RNA journal Proc Natl Acad Sci U S A volume 100 issue 16 pages 9422 ... Coiled bodies preferentially associate with U4, U11, and U12 small nuclear RNA genes in interphase HeLa ... RNAs can be compensated by insertions into the U7 small nuclear RNA journal Proc Natl Acad ... TH, Sch mperli D title A synthetic histone pre mRNA U7 small nuclear RNA chimera undergoing cis cleavage ... CH, Gall JG title U7 small nuclear RNA in C snurposomes of the Xenopus germinal vesicle journal Proc ... pmid1426580 cite journal author Watkins NJ, Phillips SC, Turner PC title The U7 small nuclear RNA ... PC title A transcriptional analysis of the gene encoding mouse U7 small nuclear RNA journal Gene volume ... analysis of mouse U7 small nuclear RNA gene expression journal Biochem Soc Trans volume 20 issue 1 ... author Phillips SC, Turner PC title The mouse U7 small nuclear RNA gene promoter functions efficiently ... gene and of two pseudogenes for mouse U7 small nuclear RNA journal Biochim Biophys Acta volume 1088 ... D, Sch mperli D title Structures of four human pseudogenes for U7 small nuclear RNA journal Gene volume ... ML title Ribozyme, antisense RNA, and antisense DNA inhibition of U7 small nuclear ribonucleoprotein ... title Structural and functional characterization of mouse U7 small nuclear RNA active in 3 processing ... G, Birnstiel ML title Functional analysis of the sea urchin U7 small nuclear RNA journal Mol ... of a sea urchin gene cluster coding for the small nuclear U7 RNA, a rare RNA species implicated in the 3 ... G, Busslinger M, Birnstiel ML title The cDNA sequences of the sea urchin U7 small nuclear RNA suggest ... id RF00066 name U7 small nuclear RNA http rnp.uthscsa.edu index.html The uRNA database Category ...   more details



  1. U2 small nuclear RNA auxiliary factor 1

    . ref name entrez Interactions U2 small nuclear RNA auxiliary factor 1 has been shown to Protein protein ... localization of the U2 small nuclear ribonucleoprotein auxiliary factor small subunit journal PNAS ... and intracellular localization of the U2 small nuclear ribonucleoprotein auxiliary factor small ... a U2AF2 large and a small subunit, is a non snRNP protein required for the binding of U2 snRNP to the pre mRNA branch site. This gene encodes the small subunit which plays a critical role in both constitutive and exonic splicing enhancer enhancer dependent RNA splicing by directly mediating interactions ... MJ, Mart nez C, Valc rcel J, Correas I title Functional association of nuclear protein 4.1 with pre ...   more details



  1. Small nucleolar RNA snR64

    Infobox rfam Name Small nucleolar RNA snR64 image RF00509.jpg width caption Predicted secondary structure and sequence conservation of snosnR64 Symbol snosnR64 AltSymbols Rfam RF00509 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA CD box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000593 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData In molecular biology , snR64 is an RNA molecule belonging to the C D class of small nuclear RNA small nucleolar RNA snoRNA , which contain the C UGAUGA and D CUGA box motifs. Similar to most members of the box C D family, snR64 is conjectured to help direct site specific 2 O methylation of substrate RNAs. ref cite journal last Lowe first TM coauthors Eddy SR year 1999 title A computational screen for methylation guide snoRNAs in yeast journal Science volume 283 pages 1168&ndash 1171 pmid 10024243 doi 10.1126 science.283.5405.1168 issue 5405 ref References reflist 1 External links Rfam id RF00509 name Small nucleolar RNA snR64 small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Z18 small nucleolar RNA

    Infobox rfam Name Small nucleolar RNA SNORD74 image RF00284.jpg width caption Predicted secondary structure and sequence conservation of SNORD74 Symbol SNORD74 AltSymbols snoZ18 Z18 Rfam RF00284 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA CD box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000593 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Z18 small nucleolar RNA also known as SNORD74 and U74 is a non coding RNA ncRNA molecule which functions in the modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA. Z18 snoRNA belongs to the SnoRNA C.2FD box C D box class of snoRNAs which contain the conserved sequence motifs known as the C box UGAUGA and the D box CUGA . Most of the members of the box C D family function in directing site specific 2 O methylation of substrate RNAs ref cite journal last Galardi first S coauthors Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I year 2002 title Purified Box C D snoRNPs Are Able To Reproduce Site Specific 2 O Methylation of Target RNA In Vitro journal Mol Cell Biol volume 22 pages 6663&ndash 6668 pmid 12215523 doi 10.1128 MCB.22.19.6663 6668.2002 issue 19 pmc 134041 ref . See also Z6 small nucleolar RNA Z12 small nucleolar RNA Z30 small nucleolar RNA References reflist 1 External links Rfam id RF00284 name Z18 small nucleolar RNA http www snorna.biotoul.fr plus.php?id U74 snoRNABase page for U74 Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA SNORD77

    Infobox rfam Name Small nucleolar RNA SNORD77 image RF00591.jpg width caption Predicted secondary structure and sequence conservation of SNORD77 Symbol SNORD77 AltSymbols snoU77 Rfam RF00591 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA CD box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000593 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData U77 belongs to the C D family of snoRNA s. It is predicted to guide 2 O ribose methylation of large 28S rRNA subunit at position A1521. ref cite journal last Tycowski first KT coauthors Aab A, Steitz JA year 2004 title Guide RNAs with 5 caps and novel box C D snoRNA like domains for modification of snRNAs in metazoa journal Curr Biol. volume 14 pages 1985&ndash 1995 pmid 15556860 doi 10.1016 j.cub.2004.11.003 issue 22 ref The C D snoRNAs Small nucleolar RNA SNORD44 U44 , Small nucleolar RNA SNORD47 U47 , Small nucleolar RNA SNORD74 U74 , Small nucleolar RNA SNORD75 U75 , Small nucleolar RNA SNORD76 U76 , Small nucleolar RNA SNORD78 U78 , Small nucleolar RNA SNORD79 U79 , Small nucleolar RNA SNORD80 U80 and Small nucleolar RNA SNORD81 U81 share the same host gene as U77 non coding . ref cite journal last Lestrade first L coauthors Weber MJ year 2006 title snoRNA LBME db, a comprehensive database of human H ACA and C D box snoRNAs journal Nucleic Acids Res. volume 34 pages D158&ndash D162 pmid 16381836 doi 10.1093 nar gkj002 issue Database issue pmc 1347365 ref References reflist 1 External links Rfam id RF00591 name Small nucleolar RNA SNORD77 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA SNORD78

    Infobox rfam Name Small nucleolar RNA SNORD78 image RF00592.jpg width caption Predicted secondary structure and sequence conservation of SNORD78 Symbol SNORD78 AltSymbols snoU78 Rfam RF00592 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA CD box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000593 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData U78 belongs to the CD family of snoRNA s. It is predicted to guide 2 O ribose methylation of the large 28S rRNA subunit at position G4593. ref cite journal last Tycowski first KT coauthors Aab A, Steitz JA year 2004 title Guide RNAs with 5 caps and novel box C D snoRNA like domains for modification of snRNAs in metazoa journal Curr Biol. volume 14 pages 1985&ndash 1995 pmid 15556860 doi 10.1016 j.cub.2004.11.003 issue 22 ref The snoRNAs Small nucleolar RNA SNORD44 U44 , Small nucleolar RNA SNORD47 U47 , Small nucleolar RNA SNORD74 U74 , Small nucleolar RNA SNORD75 U75 , Small nucleolar RNA SNORD76 U76 , Small nucleolar RNA SNORD77 U77 , Small nucleolar RNA SNORD79 U79 , Small nucleolar RNA SNORD80 U80 and Small nucleolar RNA SNORD81 U81 , also of the C D family, share the same host gene with U78 protein non coding . ref cite journal last Lestrade first L coauthors Weber MJ year 2006 title snoRNA LBME db, a comprehensive database of human H ACA and C D box snoRNAs journal Nucleic Acids Res. volume 34 pages D158&ndash D162 pmid 16381836 doi 10.1093 nar gkj002 issue Database issue pmc 1347365 ref References reflist 1 External links Rfam id RF00592 name Small nucleolar RNA SNORD78 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA SNORA53

    Infobox rfam Name Small nucleolar RNA SNORA53 image RF00563.jpg width caption Predicted secondary structure and sequence conservation of SNORA53 Symbol SNORA53 AltSymbols snoACA53 Rfam RF00563 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData The snoRNA ACA53 belongs to the snoRNA H ACA family of pseudouridylation guide snoRNAs . This H ACA box RNA was cloned by Kiss et al. 2004 ref cite journal last Kiss first AM coauthors Jady BE, Bertrand E, Kiss T year 2004 title Human box H ACA pseudouridylation guide RNA machinery journal Mol Cell Biol. volume 24 pages 5797&ndash 5807 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 issue 13 pmc 480876 ref from a HeLa cell extract immunoprecipitation immunoprecipitated with an anti GAR1 antibody. It has no identified target RNA. RNA residues targeted for Pseudouridine pseudouridylation by this molecule have not been identified. References reflist 1 External links Rfam id RF00563 name Small nucleolar RNA SNORA53 http www snorna.biotoul.fr plus.php?id ACA53 snoRNAbase entry snoRA53 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA psi28S-3327

    Infobox rfam Name Small nucleolar RNA psi28S 3327 image RF00544.jpg width caption Predicted secondary structure and sequence conservation of snopsi28S 3327 Symbol snopsi28S 3327 AltSymbols Rfam RF00544 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA psi28S 3327 also known as snoRNA psi28S 3327 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the Eukaryote eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA snoRNA and also often referred to as a guide RNA . This Drosophila melanogaster Drosophila specific snoRNA is a member of the Small nucleolar RNA H.2FACA box H ACA box class of snoRNA and is predicted to be responsible for guiding the modification of uridine 3327 in Drosophila 28S and U1920 in Drosophila 18S rRNA to pseudouridine. ref name pmid15199136 cite journal author Kiss AM, J dy BE, Bertrand E, Kiss T title Human Box H ACA Pseudouridylation Guide RNA Machinery journal Mol. Cell. Biol. volume 24 issue 13 pages 5797 807 year 2004 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 pmc 480876 ref References references External links Rfam id RF00544 name Small nucleolar RNA psi28S 3327 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA SNORA68

    Infobox rfam Name Small nucleolar RNA SNORA68 image RF00263.jpg width caption Predicted secondary structure and sequence conservation of SNORA68 Symbol SNORA68 AltSymbols U68 Rfam RF00263 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA68 also known as U68 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA68 was originally cloned from HeLa cells ref name pmid9106664 cite journal author Ganot P, Caizergues Ferrer M, Kiss T title The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation journal Genes Dev. volume 11 issue 7 pages 941 56 year 1997 pmid 9106664 doi 10.1101 gad.11.7.941 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA68 is predicted to guide the pseudouridylation of U4393 of 28S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00263 name Small nucleolar RNA SNORA68 http www snorna.biotoul.fr plus.php?id U68 snoRNAbase entry for U68 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA69

    Infobox rfam Name Small nucleolar RNA SNORA69 image RF00265.jpg width caption Predicted secondary structure and sequence conservation of SNORA69 Symbol SNORA69 AltSymbols U69 Rfam RF00265 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA69 also known as U69 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA69 was originally cloned from HeLa cells ref name pmid9106664 cite journal author Ganot P, Caizergues Ferrer M, Kiss T title The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation journal Genes Dev. volume 11 issue 7 pages 941 56 year 1997 pmid 9106664 doi 10.1101 gad.11.7.941 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA69 is predicted to guide the pseudouridylation of U36 of 18S and U69 of 5.8S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00265 name Small nucleolar RNA SNORA69 http www snorna.biotoul.fr plus.php?id U69 snoRNAbase entry for U69 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA72

    Infobox rfam Name Small nucleolar RNA SNORA72 image RF00139.jpg width caption Predicted secondary structure and sequence conservation of SNORA72 Symbol SNORA72 AltSymbols U72 Rfam RF00139 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA72 also known as U72 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA30 was originally cloned from HeLa cells ref name pmid9106664 cite journal author Ganot P, Caizergues Ferrer M, Kiss T title The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation journal Genes Dev. volume 11 issue 7 pages 941 56 year 1997 pmid 9106664 doi 10.1101 gad.11.7.941 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA72 is predicted to guide the pseudouridylation of U55 of 5.8S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00139 name Small nucleolar RNA SNORA72 http www snorna.biotoul.fr plus.php?id U72 snoRNAbase entry for U72 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA70

    Infobox rfam Name Small nucleolar RNA SNORA70 image RF00156.jpg width caption Predicted secondary structure and sequence conservation of SNORA70 Symbol SNORA70 AltSymbols U70 Rfam RF00156 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA70 also known as U70 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA70 was originally cloned from HeLa cells ref name pmid9106664 cite journal author Ganot P, Caizergues Ferrer M, Kiss T title The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation journal Genes Dev. volume 11 issue 7 pages 941 56 year 1997 pmid 9106664 doi 10.1101 gad.11.7.941 issn ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA70 is predicted to guide the pseudouridylation of U1692 of 18S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00156 name Small nucleolar RNA SNORA70 http www snorna.biotoul.fr plus.php?id U70 snoRNAbase entry for U70 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA R30/Z108

    Infobox rfam Name Small nucleolar RNA R30 Z108 image RF00046.jpg width caption Predicted secondary structure and sequence conservation of snoR30 Symbol snoR30 AltSymbols Rfam RF00046 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA CD box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000593 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData In molecular biology , Small nucleolar RNA R30 Z108 snoR30 is a C D box small nucleolar RNA that acts as a methylation guide for 18S ribosomal RNA in plant s. References reflist 1 cite journal last Marker first C coauthors Zemann A, Terhorst T, Kiefmann M, Kastenmayer JP, Green P, Bachellerie JP, Brosius J, Huttenhofer A year 2002 title Experimental RNomics. Identification of 140 Candidates for Small Non Messenger RNAs in the Plant Arabidopsis thaliana journal Curr Biol volume 12 pages 2002&ndash 2013 pmid 12477388 doi 10.1016 S0960 9822 02 01304 0 issue 23 External links Rfam id RF00046 name Small nucleolar RNA R30 Z108 Small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA SNORA43

    Infobox rfam Name Small nucleolar RNA SNORA43 image RF00416.jpg width caption Predicted secondary structure and sequence conservation of SNORA43 Symbol SNORA43 AltSymbols snoACA43 Rfam RF00416 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA43 also known as ACA43 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA43 was originally cloned from HeLa cells ref name pmid15199136 cite journal author Kiss AM, Jady BE, Bertrand E, Kiss T title Human box H ACA pseudouridylation guide RNA machinery journal Mol. Cell. Biol. volume 24 issue 13 pages 5797 807 year 2004 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 pmc 480876 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with Nucleolar protein, member A1 GAR1 protein . snoRNA ACA43 is predicted to guide the pseudouridylation of U4938 of 28S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00416 name Small nucleolar RNA SNORA43 http www snorna.biotoul.fr plus.php?id ACA43 snoRNAbase entry for ACA43 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA46

    Infobox rfam Name Small nucleolar RNA SNORA46 image RF00404.jpg width caption Predicted secondary structure and sequence conservation of SNORA46 Symbol SNORA46 AltSymbols snoACA46 Rfam RF00404 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA46 also known as ACA46 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA46 was originally cloned from HeLa cells ref name pmid15199136 cite journal author Kiss AM, Jady BE, Bertrand E, Kiss T title Human box H ACA pseudouridylation guide RNA machinery journal Mol. Cell. Biol. volume 24 issue 13 pages 5797 807 year 2004 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 pmc 480876 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA46 is predicted to guide the pseudouridylation of U649 of 18S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00404 name Small nucleolar RNA SNORA46 http www snorna.biotoul.fr plus.php?id ACA46 snoRNAbase entry for ACA46 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA50

    Infobox rfam Name Small nucleolar RNA SNORA50 image RF00407.jpg width caption Predicted secondary structure and sequence conservation of SNORA50 Symbol SNORA50 AltSymbols snoACA50 Rfam RF00407 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0001263 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA50 also known as ACA50 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA50 was originally cloned from HeLa cells ref name pmid15199136 cite journal author Kiss AM, Jady BE, Bertrand E, Kiss T title Human box H ACA pseudouridylation guide RNA machinery journal Mol. Cell. Biol. volume 24 issue 13 pages 5797 807 year 2004 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 pmc 480876 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA50 is predicted to guide the pseudouridylation of U34 and U105 of 18S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00407 name Small nucleolar RNA SNORA50 http www snorna.biotoul.fr plus.php?id ACA50 snoRNAbase entry for ACA50 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA52

    Infobox rfam Name Small nucleolar RNA SNORA52 image RF00419.jpg width caption Predicted secondary structure and sequence conservation of SNORA52 Symbol SNORA52 AltSymbols snoACA52 Rfam RF00419 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA52 also known as ACA52 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA52 was originally cloned from HeLa cells ref name pmid15199136 cite journal author Kiss AM, Jady BE, Bertrand E, Kiss T title Human box H ACA pseudouridylation guide RNA machinery journal Mol. Cell. Biol. volume 24 issue 13 pages 5797 807 year 2004 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 pmc 480876 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA52 is predicted to guide the pseudouridylation of U3823 of 28S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00419 name Small nucleolar RNA SNORA52 http www snorna.biotoul.fr plus.php?id ACA52 snoRNAbase entry for ACA52 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA54

    Infobox rfam Name Small nucleolar RNA SNORA54 image RF00430.jpg width caption Predicted secondary structure and sequence conservation of SNORA54 Symbol SNORA54 AltSymbols snoACA54 Rfam RF00430 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA54 also known as ACA54 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA54 was originally cloned from HeLa cells ref name pmid15199136 cite journal author Kiss AM, Jady BE, Bertrand E, Kiss T title Human box H ACA pseudouridylation guide RNA machinery journal Mol. Cell. Biol. volume 24 issue 13 pages 5797 807 year 2004 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 pmc 480876 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA54 is predicted to guide the pseudouridylation of U3801 of 28S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00430 name Small nucleolar RNA SNORA54 http www snorna.biotoul.fr plus.php?id ACA54 snoRNAbase entry for ACA54 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA55

    Infobox rfam Name Small nucleolar RNA SNORA55 image RF00431.jpg width caption Predicted secondary structure and sequence conservation of SNORA55 Symbol SNORA55 AltSymbols snoACA55 Rfam RF00431 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA55 also known as ACA55 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA55 was originally cloned from HeLa cells ref name pmid15199136 cite journal author Kiss AM, Jady BE, Bertrand E, Kiss T title Human box H ACA pseudouridylation guide RNA machinery journal Mol. Cell. Biol. volume 24 issue 13 pages 5797 807 year 2004 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 pmc 480876 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA55 is predicted to guide the pseudouridylation of U36 of 18S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00431 name Small nucleolar RNA SNORA55 http www snorna.biotoul.fr plus.php?id ACA55 snoRNAbase entry for ACA55 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA56

    Infobox rfam Name Small nucleolar RNA SNORA56 image RF00417.jpg width caption Predicted secondary structure and sequence conservation of SNORA56 Symbol SNORA56 AltSymbols snoACA56 Rfam RF00417 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA56 also known as ACA56 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA56 was originally cloned from HeLa cells ref name pmid15199136 cite journal author Kiss AM, Jady BE, Bertrand E, Kiss T title Human box H ACA pseudouridylation guide RNA machinery journal Mol. Cell. Biol. volume 24 issue 13 pages 5797 807 year 2004 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 pmc 480876 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA56 is predicted to guide the pseudouridylation of U1664 of 28S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00417 name Small nucleolar RNA SNORA56 http www snorna.biotoul.fr plus.php?id ACA56 snoRNAbase entry for ACA56 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA61

    Infobox rfam Name Small nucleolar RNA SNORA61 image RF00420.jpg width caption Predicted secondary structure and sequence conservation of SNORA61 Symbol SNORA61 AltSymbols snoACA61 Rfam RF00420 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA61 also known as ACA61 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA61 was originally cloned from HeLa cells ref name pmid15199136 cite journal author Kiss AM, Jady BE, Bertrand E, Kiss T title Human box H ACA pseudouridylation guide RNA machinery journal Mol. Cell. Biol. volume 24 issue 13 pages 5797 807 year 2004 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 pmc 480876 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA61 is predicted to guide the pseudouridylation of U2495 of 28S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00420 name Small nucleolar RNA SNORA61 http www snorna.biotoul.fr plus.php?id ACA61 snoRNAbase entry for ACA61 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA SNORA49

    Infobox rfam Name Small nucleolar RNA SNORA49 image RF00562.jpg width caption Predicted secondary structure and sequence conservation of SNORA49 Symbol SNORA49 AltSymbols snoACA49 Rfam RF00562 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA ACA49 is a snoRNA , originally cloned by Kiss et al. 2004 ref cite journal last Kiss first AM coauthors Jady BE, Bertrand E, Kiss T year 2004 title Human box H ACA pseudouridylation guide RNA machinery journal Mol Cell Biol. volume 24 pages 5797&ndash 5807 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 issue 13 pmc 480876 ref from a HeLa cell extract immunoprecipitated with an anti GAR1 antibody. It has no identified target RNA. References reflist 1 External links Rfam id RF00562 name Small nucleolar RNA SNORA49 http www snorna.biotoul.fr plus.php?id ACA49 snoRNAbase entry for ACA49 Category Small nuclear RNA molecular cell biology stub Small nucleolar RNA SNORA ...   more details



  1. Small nucleolar RNA snoM1

    Infobox rfam Name Small nucleolar RNA snoM1 image RF00293.jpg width caption Predicted secondary structure and sequence conservation of snoM1 Symbol snoM1 AltSymbols Rfam RF00293 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA snoM1 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . M1 is a predicted to belong to the SnoRNA H.2FACA box H ACA box class of snoRNAs which are thought to guide the sites of modification of uridines to pseudouridines. ref name pmid15199136 cite journal author Kiss AM, J dy BE, Bertrand E, Kiss T title Human Box H ACA Pseudouridylation Guide RNA Machinery journal Mol. Cell. Biol. volume 24 issue 13 pages 5797 807 year 2004 pmid 15199136 doi 10.1128 MCB.24.13.5797 5807.2004 pmc 480876 ref snoM1 seems to be found exclusively in Drosophila species. References references 2 cite journal last Kiss first T year 2002 title Small nucleolar RNAs an abundant group of noncoding RNAs with diverse cellular functions journal Cell volume 109 pages 145&ndash 148 pmid 12007400 doi 10.1016 S0092 8674 02 00718 3 issue 2 External links Rfam id RF00293 name Small nucleolar RNA snoM1 small nucleolar RNA Category Small nuclear RNA molecular cell biology stub ...   more details



  1. Small nucleolar RNA SNORA57

    Infobox rfam Name Small nucleolar RNA SNORA57 image RF00191.jpg width caption Predicted secondary structure and sequence conservation of SNORA57 Symbol SNORA57 AltSymbols U99 Rfam RF00191 miRBase miRBase family RNA type Gene Small nuclear RNA snRNA Small nucleolar RNA snoRNA HACA box Tax domain Eukaryota GO GO 0006396 GO 0005730 SO SO 0000594 CAS number EntrezGene HGNCid OMIM PDB RefSeq Chromosome Arm Band LocusSupplementaryData Small nucleolar RNA SNORA57 also known as U99 and MBI 64 is a non coding RNA ncRNA molecule which functions in the biogenesis modification of other small nuclear RNA s snRNAs . This type of modifiying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a snoRNA small nucleolar RNA snoRNA and also often referred to as a guide RNA . ACA57 was originally cloned from a mouse brain library ref name pmid11387227 cite journal author Huttenhofer A, Kiefmann M, Meier Ewert S, et al. title RNomics an experimental approach that identifies 201 candidates for novel, small, non messenger RNAs in mouse journal EMBO J. volume 20 issue 11 pages 2943 53 year 2001 pmid 11387227 doi 10.1093 emboj 20.11.2943 pmc 125495 ref and belongs to the SnoRNA H.2FACA box H ACA box class of snoRNAs as it has the predicted hairpin hinge hairpin tail structure, has the conserved H ACA box motifs and is found associated with GAR1 protein. snoRNA ACA57 is predicted to guide the pseudouridylation of U1004 of 18S ribosomal RNA rRNA . Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine . References reflist 1 External links Rfam id RF00191 name Small nucleolar RNA SNORA57 http www snorna.biotoul.fr plus.php?id U99 snoRNAbase entry for U99 Small nucleolar RNA SNORA Category Small nuclear RNA molecular cell biology stub ...   more details




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